7PA7

BK polyomavirus VP1 in complex with scFv 29B1

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		277.15	0.1 M sodium malonate (pH 5.5), 14.4% PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
3.05	59.65

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 114.588	α = 92.315
b = 114.614	β = 105.996
c = 142.373	γ = 111.407

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	93	PIXEL	DECTRIS PILATUS 2M-F		2017-10-13	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	0.99	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.6	49.2	94.8	0.17	0.98	5.9	1.8		181005			34

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.6	2.81			0.74	0.61	1.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	4MJ1, 4KQ3	2.6	48.444	180984	1810	91.922	0.247	0.2471	0.2724	26.747

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.103	-0.183	0.491	-1.288	0.287	1.898

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.569
r_dihedral_angle_4_deg	21.388
r_dihedral_angle_3_deg	16.608
r_lrange_other	7.781
r_lrange_it	7.778
r_dihedral_angle_1_deg	6.792
r_scangle_it	4.507
r_scangle_other	4.507
r_mcangle_it	4.158
r_mcangle_other	4.158
r_scbond_it	2.848
r_scbond_other	2.848
r_mcbond_it	2.639
r_mcbond_other	2.639
r_angle_other_deg	2.376
r_angle_refined_deg	1.438
r_nbd_other	0.285
r_symmetry_xyhbond_nbd_refined	0.278
r_symmetry_nbd_other	0.223
r_nbd_refined	0.209
r_xyhbond_nbd_refined	0.209
r_symmetry_nbd_refined	0.199
r_symmetry_xyhbond_nbd_other	0.189
r_nbtor_refined	0.166
r_symmetry_nbtor_other	0.075
r_chiral_restr	0.064
r_xyhbond_nbd_other	0.044
r_bond_other_d	0.037
r_bond_refined_d	0.007
r_gen_planes_other	0.007
r_gen_planes_refined	0.005

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	36978
Nucleic Acid Atoms
Solvent Atoms	726
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing