7KJZ

crystal structure of PLEKHA7 PH domain biding inositol-tetraphosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.185 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis for the association of PLEKHA7 with membrane-embedded phosphatidylinositol lipids

Aleshin, A.E.Yao, Y.Iftikhar, A.Bobkov, A.A.Yu, J.Cadwell, G.Klein, M.G.Dong, C.Bankston, L.A.Liddington, R.C.Im, W.Powis, G.Marassi, F.M.

(2021) Biorxiv 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Pleckstrin homology domain-containing family A member 7 AB140Homo sapiensMutation(s): 1 
Gene Names: PLEKHA7
Find proteins for Q6IQ23 (Homo sapiens)
Explore Q6IQ23 
Go to UniProtKB:  Q6IQ23
NIH Common Fund Data Resources
PHAROS:  Q6IQ23
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
4IP
Query on 4IP

Download Ideal Coordinates CCD File 
B
INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE
C6 H16 O18 P4
CIPFCGZLFXVXBG-CNWJWELYSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
B
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.185 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.47α = 90
b = 77.47β = 90
c = 82.561γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
iMOSFLMdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesCA179087
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesCA160398

Revision History  (Full details and data files)

  • Version 1.0: 2021-04-07
    Type: Initial release