7ZMB

CryoEM structure of mitochondrial complex I from Chaetomium thermophilum (state 2)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.75 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Conformational changes in mitochondrial complex I of the thermophilic eukaryote Chaetomium thermophilum.

Laube, E.Meier-Credo, J.Langer, J.D.Kuhlbrandt, W.

(2022) Sci Adv 8: eadc9952-eadc9952

  • DOI: https://doi.org/10.1126/sciadv.adc9952
  • Primary Citation of Related Structures:  
    7ZM7, 7ZM8, 7ZMB, 7ZME, 7ZMG, 7ZMH

  • PubMed Abstract: 

    Mitochondrial complex I is a redox-driven proton pump that generates proton-motive force across the inner mitochondrial membrane, powering oxidative phosphorylation and ATP synthesis in eukaryotes. We report the structure of complex I from the thermophilic fungus Chaetomium thermophilum , determined by cryoEM up to 2.4-Å resolution. We show that the complex undergoes a transition between two conformations, which we refer to as state 1 and state 2. The conformational switch is manifest in a twisting movement of the peripheral arm relative to the membrane arm, but most notably in substantial rearrangements of the Q-binding cavity and the E-channel, resulting in a continuous aqueous passage from the E-channel to subunit ND5 at the far end of the membrane arm. The conformational changes in the complex interior resemble those reported for mammalian complex I, suggesting a highly conserved, universal mechanism of coupling electron transport to proton pumping.


  • Organizational Affiliation

    Max-Planck-Institute of Biophysics, Frankfurt 60438, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 1A [auth 1]378Thermochaetoides thermophila DSM 1495Mutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for G1DJA6 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G1DJA6 
Go to UniProtKB:  G1DJA6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1DJA6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase subunit 2B [auth 2]571Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G1DJ98 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G1DJ98 
Go to UniProtKB:  G1DJ98
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1DJ98
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 3C [auth 3]146Thermochaetoides thermophila DSM 1495Mutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for G1DJ99 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G1DJ99 
Go to UniProtKB:  G1DJ99
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1DJ99
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 4D [auth 4]542Thermochaetoides thermophila DSM 1495Mutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for G1DJA7 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G1DJA7 
Go to UniProtKB:  G1DJA7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1DJA7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 5E [auth 5]679Thermochaetoides thermophila DSM 1495Mutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for G1DJA3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G1DJA3 
Go to UniProtKB:  G1DJA3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1DJA3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 6F [auth 6]224Thermochaetoides thermophila DSM 1495Mutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for G1DJ96 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G1DJ96 
Go to UniProtKB:  G1DJ96
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1DJ96
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7G [auth 8]86Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0SAE9 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SAE9 
Go to UniProtKB:  G0SAE9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SAE9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Subunit NDUFS5 of NADH-ubiquinone oxidoreductase (Complex I)H [auth 9]785Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0SG48 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SG48 
Go to UniProtKB:  G0SG48
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SG48
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase-like proteinI [auth A]749Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0RYA1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0RYA1 
Go to UniProtKB:  G0RYA1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0RYA1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialJ [auth B]507Thermochaetoides thermophila DSM 1495Mutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for G0SA46 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SA46 
Go to UniProtKB:  G0SA46
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SA46
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase 49 kDa subunit-like proteinK [auth C]499Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SCG0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SCG0 
Go to UniProtKB:  G0SCG0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SCG0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Subunit NDUFA1 of NADH-ubiquinone oxidoreductase (Complex I)L [auth D]86Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase (Ubiquinone)-like proteinM [auth E]378Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SB35 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SB35 
Go to UniProtKB:  G0SB35
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SB35
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase-like proteinN [auth F]261Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S8H4 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S8H4 
Go to UniProtKB:  G0S8H4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S8H4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase 30.4 kDa subunit-like proteinO [auth G]293Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0S8U1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S8U1 
Go to UniProtKB:  G0S8U1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S8U1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Subunit NDUFV2 of NADH-ubiquinone oxidoreductase (Complex I)P [auth H]318Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SDM6 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SDM6 
Go to UniProtKB:  G0SDM6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SDM6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Oxidoreductase-like proteinQ [auth I]223Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SBG8 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SBG8 
Go to UniProtKB:  G0SBG8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SBG8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase-like proteinR [auth J]199Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S2B3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S2B3 
Go to UniProtKB:  G0S2B3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S2B3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase-like proteinS [auth K]230Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0S9I6 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S9I6 
Go to UniProtKB:  G0S9I6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S9I6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 4LT [auth L]89Thermochaetoides thermophila DSM 1495Mutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for G1DJA2 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G1DJA2 
Go to UniProtKB:  G1DJA2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1DJA2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase-like proteinU [auth M]168Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0S6J1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S6J1 
Go to UniProtKB:  G0S6J1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S6J1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl carrier proteinV [auth O],
X [auth Q]
141Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SBG9 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SBG9 
Go to UniProtKB:  G0SBG9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SBG9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase B14 subunit-like proteinW [auth P]124Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S4Q3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S4Q3 
Go to UniProtKB:  G0S4Q3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S4Q3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-B22Y [auth R]99Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0SAY0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SAY0 
Go to UniProtKB:  G0SAY0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SAY0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-ESSSZ [auth S]143Thermochaetoides thermophila DSM 1495Mutation(s): 0 
EC: 3.6.4.12
Membrane Entity: Yes 
UniProt
Find proteins for G0SAN0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SAN0 
Go to UniProtKB:  G0SAN0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SAN0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductaseAA [auth U]186Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S0R3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S0R3 
Go to UniProtKB:  G0S0R3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S0R3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13BA [auth W]121Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0SB83 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SB83 
Go to UniProtKB:  G0SB83
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SB83
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase-like proteinCA [auth X]191Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S0S8 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S0S8 
Go to UniProtKB:  G0S0S8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S0S8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrialDA [auth Y]210Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S3Y7 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S3Y7 
Go to UniProtKB:  G0S3Y7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S3Y7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase-like proteinEA [auth Z]196Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SEF0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SEF0 
Go to UniProtKB:  G0SEF0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SEF0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase (Ubiquinone)-like proteinFA [auth a]203Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0RXU4 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0RXU4 
Go to UniProtKB:  G0RXU4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0RXU4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Subunit NDUFC2 of NADH-ubiquinone oxidoreductase (Complex I)GA [auth b]94Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S812 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S812 
Go to UniProtKB:  G0S812
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S812
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
Subunit NDUFB3 of NADH-ubiquinone oxidoreductase (Complex I)HA [auth c]93Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S681 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S681 
Go to UniProtKB:  G0S681
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S681
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Subunit NDUFB10 of NADH-ubiquinone oxidoreductase (Complex I)IA [auth d]105Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0SEZ1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SEZ1 
Go to UniProtKB:  G0SEZ1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SEZ1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Subunit NDUFB2 of NADH-ubiquinone oxidoreductase (Complex I)JA [auth e]46Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase-like proteinKA [auth f]95Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S1P3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S1P3 
Go to UniProtKB:  G0S1P3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S1P3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
Subunit NDUFA3 of NADH-ubiquinone oxidoreductase (Complex I)LA [auth g]82Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0RZZ2 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0RZZ2 
Go to UniProtKB:  G0RZZ2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0RZZ2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunitMA [auth h]134Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S775 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S775 
Go to UniProtKB:  G0S775
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S775
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
Subunit NDUFB6 of NADH-ubiquinone oxidoreductase (Complex I)NA [auth i]93Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S569 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S569 
Go to UniProtKB:  G0S569
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S569
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
Subunit NDUFB4 of NADH-ubiquinone oxidoreductase (Complex I)OA [auth j]75Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S5C8 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S5C8 
Go to UniProtKB:  G0S5C8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S5C8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Subunit NDUFB5 of NADH-ubiquinone oxidoreductase (Complex I)PA [auth n]184Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G0S086 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S086 
Go to UniProtKB:  G0S086
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S086
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
Oxidoreductase-like domain-containing proteinQA [auth o]380Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0S982 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0S982 
Go to UniProtKB:  G0S982
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0S982
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 10 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CDL
Query on CDL

Download Ideal Coordinates CCD File 
EC [auth X],
FC [auth g],
HC [auth h],
UA [auth 2],
YA [auth 4]
CARDIOLIPIN
C81 H156 O17 P2
XVTUQDWPJJBEHJ-KZCWQMDCSA-L
LMN
Query on LMN

Download Ideal Coordinates CCD File 
JC [auth j],
VA [auth 2],
VB [auth J]
Lauryl Maltose Neopentyl Glycol
C47 H88 O22
MADJBYLAYPCCOO-XYPZXBMFSA-N
PC1
Query on PC1

Download Ideal Coordinates CCD File 
AB [auth 4]
BC [auth S]
CB [auth 5]
HB [auth 5]
TA [auth 1]
AB [auth 4],
BC [auth S],
CB [auth 5],
HB [auth 5],
TA [auth 1],
WA [auth 2],
XA [auth 3],
XB [auth K]
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
C44 H88 N O8 P
NRJAVPSFFCBXDT-HUESYALOSA-N
3PE
Query on 3PE

Download Ideal Coordinates CCD File 
BB [auth 4]
CC [auth W]
DB [auth 5]
DC [auth W]
EB [auth 5]
BB [auth 4],
CC [auth W],
DB [auth 5],
DC [auth W],
EB [auth 5],
FB [auth 5],
GB [auth 5],
GC [auth g],
IB [auth 5],
IC [auth i],
JB [auth 8],
KC [auth n],
PB [auth E],
RA [auth 1],
SA [auth 1],
UB [auth J],
ZA [auth 4]
1,2-Distearoyl-sn-glycerophosphoethanolamine
C41 H82 N O8 P
LVNGJLRDBYCPGB-LDLOPFEMSA-N
NDP
Query on NDP

Download Ideal Coordinates CCD File 
QB [auth E]NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
ZMP
Query on ZMP

Download Ideal Coordinates CCD File 
AC [auth Q],
ZB [auth O]
S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate
C25 H49 N2 O8 P S
HDTINWYIVVMRIN-HSZRJFAPSA-N
FMN
Query on FMN

Download Ideal Coordinates CCD File 
OB [auth B]FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
SF4
Query on SF4

Download Ideal Coordinates CCD File 
LB [auth A]
MB [auth A]
NB [auth B]
SB [auth I]
TB [auth I]
LB [auth A],
MB [auth A],
NB [auth B],
SB [auth I],
TB [auth I],
WB [auth K]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
FES
Query on FES

Download Ideal Coordinates CCD File 
KB [auth A],
RB [auth H]
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
YB [auth M]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
2MR
Query on 2MR
K [auth C]L-PEPTIDE LINKINGC8 H18 N4 O2ARG
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.75 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19
MODEL REFINEMENTCoot0.9.2
RECONSTRUCTIONcryoSPARC3.0.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Max Planck SocietyGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-30
    Type: Initial release
  • Version 1.1: 2022-12-07
    Changes: Database references