Download MendeleyStructure of siphophage T5 Receptor Binding Protein in complex with its E. coli receptor FhuA
Degroux, S., Effantin, G., Linares, R., Schoehn, G., Breyton, C.To be published.
8B14
T5 Receptor Binding Protein pb5 in complex with its E. coli receptor FhuA
- PDB DOI: 10.2210/pdb8B14/pdb
- EM Map EMD-15802: EMDB EMDataResource
- Classification: VIRAL PROTEIN
- Organism(s): Escherichia coli, Escherichia phage T5
- Expression System: Escherichia coli, Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-09-09 Released: 2023-02-08
- Funding Organization(s): Agence Nationale de la Recherche (ANR)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.60 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| FhuA iron-ferrichrome transporter | A | 723 | Escherichia coli | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P06971 (Escherichia coli (strain K12)) Explore P06971 Go to UniProtKB: P06971 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P06971 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| pb5 bacteriophage T5 receptor binding protein | B | 640 | Escherichia phage T5 | Mutation(s): 0 Gene Names: oad, T5.157, T5p153 |  |
UniProt | |||||
Find proteins for P23207 (Escherichia phage T5) Explore P23207 Go to UniProtKB: P23207 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P23207 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| LU9 Query on LU9 | D [auth A] | [(2R,3S,4R,5R,6R)-2-[[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-4-[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-2-carboxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-carboxy-5-oxidanyl-oxan-2-yl]oxymethyl]-5-[[(3R)-3-dodecanoyloxytetradecanoyl]amino]-4-(3-nonanoyloxypropanoyloxy)-6-[[(2R,3S,4R,5R,6R)-3-oxidanyl-4-[(3S)-3-oxidanyltetradecanoyl]oxy-5-[[(3R)-3-oxidanyltridecanoyl]amino]-6-phosphonatooxy-oxan-2-yl]methoxy]oxan-3-yl] phosphate C93 H164 N2 O39 P2 VKIJVPHKEVBYMR-HZMIYFLPSA-J |  | Ligand Interaction | |
| DDQ (Subject of Investigation/LOI) Query on DDQ | C [auth A] | DECYLAMINE-N,N-DIMETHYL-N-OXIDE C12 H27 N O ZRKZFNZPJKEWPC-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.60 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | Coot | 0.9.2 |
| MODEL REFINEMENT | PHENIX | 1.18.2-3874 |
| RECONSTRUCTION | RELION | 3 |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-02-08 Deposition Author(s): Degroux, S., Effantin, G., Linares, R., Schoehn, G., Breyton, C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Agence Nationale de la Recherche (ANR) | France | ANR-16-CE11-0027 |
| Agence Nationale de la Recherche (ANR) | France | ANR-21-CE11-0023 |
Revision History (Full details and data files)
- Version 1.0: 2023-02-08
Type: Initial release
