7UNV

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth j]PF00338e7unvj1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
K [auth k]PF00411e7unvk1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
L [auth l]PF00164e7unvl1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
M [auth m]PF00416e7unvm1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
N [auth n]PF00253e7unvn1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
O [auth o]PF00312e7unvo1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
P [auth p]PF00886e7unvp1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
Q [auth q]PF00366e7unvq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
R [auth r]PF01084e7unvr1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
S [auth s]PF00203e7unvs1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
B [auth b]PF00318e7unvb1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
T [auth t]PF01649e7unvt1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
U [auth u]PF01165e7unvu1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
X [auth x]PF03144e7unvx2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF03144ECOD (1.6)
X [auth x]PF22042e7unvx4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF22042ECOD (1.6)
X [auth x]PF04760e7unvx3 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: PF04760ECOD (1.6)
X [auth x]PF00009e7unvx5 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)
X [auth x]PF11987e7unvx1 A: a/b three-layered sandwichesX: Initiation factor IF2/eIF5b, domain 3 (From Topology)H: Initiation factor IF2/eIF5b, domain 3 (From Topology)T: Initiation factor IF2/eIF5b, domain 3F: PF11987ECOD (1.6)
AA [auth C]PF00181e7unvC1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
AA [auth C]PF03947e7unvC2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
BA [auth D]PF00297e7unvD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
CA [auth E]PF00573e7unvE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
C [auth c]PF00189e7unvc1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
C [auth c]PF07650e7unvc2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
DA [auth F]PF00281,PF00673e7unvF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
EA [auth G]PF00347e7unvG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
FA [auth H]PF01281e7unvH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
GA [auth I]PF00466e7unvI1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
HA [auth J]PF00298e7unvJ1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
HA [auth J]PF03946e7unvJ2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
IA [auth L]PF00572e7unvL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
JA [auth M]PF00238e7unvM1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
KA [auth N]PF00828e7unvN1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
LA [auth O]PF00252e7unvO1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
MA [auth P]PF01196e7unvP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
D [auth d]PF00163,PF01479e7unvd1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
NA [auth Q]PF00861e7unvQ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
OA [auth R]PF01245e7unvR1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
PA [auth S]PF00453e7unvS1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
QA [auth T]PF00829e7unvT1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
RA [auth U]PF00237e7unvU1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
SA [auth V]PF00276e7unvV1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
TA [auth W]PF00467,PF17136e7unvW1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
UA [auth X]PF01386e7unvX1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
UA [auth X]PF14693e7unvX2 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology)T: Ribosomal protein TL5/L25 C-terminal domain-relatedF: PF14693ECOD (1.6)
VA [auth Y]PF01016e7unvY1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
WA [auth Z]PF00830e7unvZ1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
E [auth e]PF03719e7unve1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
E [auth e]PF00333e7unve2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
XA [auth 1]PF00831e7unv11 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
YA [auth 2]PF00327e7unv21 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
ZA [auth 3]PF01197e7unv31 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
AB [auth 4]PF01783e7unv41 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
BB [auth 5]PF00471e7unv51 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
CB [auth 6]PF00468e7unv61 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
DB [auth 7]PF01632e7unv71 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
EB [auth 8]PF00444e7unv81 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
F [auth f]PF01250e7unvf1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
G [auth g]PF00177e7unvg1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
H [auth h]PF00410e7unvh2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
H [auth h]PF00410e7unvh1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
I [auth i]PF00380e7unvi1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth j]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
K [auth k]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
L [auth l]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
M [auth m]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
N [auth n]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
O [auth o]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
P [auth p]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
Q [auth q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
R [auth r]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
S [auth s]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
B [auth b]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
T [auth t]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
U [auth u]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
X [auth x]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
X [auth x]PF04760Translation initiation factor IF-2, N-terminal region (IF2_N)Translation initiation factor IF-2, N-terminal regionThis conserved feature at the N-terminus of bacterial translation initiation factor IF2 has recently had its structure solved. It shows structural similarity to the tRNA anticodon Stem Contact Fold domains of the methionyl-tRNA and glutaminyl-tRNA s ...This conserved feature at the N-terminus of bacterial translation initiation factor IF2 has recently had its structure solved. It shows structural similarity to the tRNA anticodon Stem Contact Fold domains of the methionyl-tRNA and glutaminyl-tRNA synthetases, and a similar fold is also found in the B5 domain of the phenylalanine-tRNA synthetase.
Domain
X [auth x]PF11987Translation-initiation factor 2 (IF-2)Translation-initiation factor 2IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 pr ...IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 promotes the binding of the initiator tRNA to the A site in the smaller ribosomal subunit and catalyses the hydrolysis of GTP following initiation-complex formation [2].
Domain
AA [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
AA [auth C]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
BA [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
CA [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
C [auth c]PF07650KH domain (KH_2)KH domain- Domain
C [auth c]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
DA [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
DA [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
EA [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
FA [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
FA [auth H]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
GA [auth I]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
HA [auth J]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
HA [auth J]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
IA [auth L]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
JA [auth M]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
KA [auth N]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
LA [auth O]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
MA [auth P]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
D [auth d]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
D [auth d]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
NA [auth Q]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
OA [auth R]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
PA [auth S]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
QA [auth T]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
RA [auth U]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
SA [auth V]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
TA [auth W]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
TA [auth W]PF00467KOW motif (KOW)KOW motif- Family
UA [auth X]PF14693Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C)Ribosomal protein TL5, C-terminal domainThis family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ...This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown.
Domain
UA [auth X]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
VA [auth Y]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
WA [auth Z]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
E [auth e]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
E [auth e]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
XA [auth 1]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
YA [auth 2]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
ZA [auth 3]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
AB [auth 4]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
BB [auth 5]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
CB [auth 6]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
DB [auth 7]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
EB [auth 8]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
F [auth f]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
G [auth g]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
H [auth h]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
I [auth i]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a]16S Ribosomal RNA---
J [auth j]30S ribosomal protein S10
K [auth k]30S ribosomal protein S11
L [auth l]30S ribosomal protein S12
M [auth m]30S ribosomal protein S13
N [auth n]30S ribosomal protein S14
O [auth o]30S ribosomal protein S15
P [auth p]30S ribosomal protein S16
Q [auth q]30S ribosomal protein S17
R [auth r]30S ribosomal protein S18
S [auth s]30S ribosomal protein S19
B [auth b]30S ribosomal protein S2
T [auth t]30S ribosomal protein S20
U [auth u]30S ribosomal protein S21
V [auth v]P-site initiator tRNA---
W [auth w]mRNA---
X [auth x]Translation initiation factor IF-2
Y [auth A]23S Ribosomal RNA---
Z [auth B]5S Ribosomal RNA---
AA [auth C]50S ribosomal protein L2
BA [auth D]50S ribosomal protein L3
CA [auth E]50S ribosomal protein L4
C [auth c]30S ribosomal protein S3
DA [auth F]50S ribosomal protein L5
EA [auth G]50S ribosomal protein L6
FA [auth H]50S ribosomal protein L9
GA [auth I]50S ribosomal protein L10
HA [auth J]50S ribosomal protein L11
IA [auth L]50S ribosomal protein L13
JA [auth M]50S ribosomal protein L14
KA [auth N]50S ribosomal protein L15
LA [auth O]50S ribosomal protein L16
MA [auth P]50S ribosomal protein L17
D [auth d]30S ribosomal protein S4
NA [auth Q]50S ribosomal protein L18
OA [auth R]50S ribosomal protein L19
PA [auth S]50S ribosomal protein L20
QA [auth T]50S ribosomal protein L21
RA [auth U]50S ribosomal protein L22
SA [auth V]50S ribosomal protein L23
TA [auth W]50S ribosomal protein L24
UA [auth X]50S ribosomal protein L25
VA [auth Y]50S ribosomal protein L27
WA [auth Z]50S ribosomal protein L28
E [auth e]30S ribosomal protein S5
XA [auth 1]50S ribosomal protein L29
YA [auth 2]50S ribosomal protein L30
ZA [auth 3]50S ribosomal protein L31
AB [auth 4]50S ribosomal protein L32
BB [auth 5]50S ribosomal protein L33
CB [auth 6]50S ribosomal protein L34
DB [auth 7]50S ribosomal protein L35
EB [auth 8]50S ribosomal protein L36
F [auth f]30S ribosomal protein S6
G [auth g]30S ribosomal protein S7
H [auth h]30S ribosomal protein S8
I [auth i]30S ribosomal protein S9

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth j]IPR001848Small ribosomal subunit protein uS10Family
J [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
J [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
J [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
K [auth k]IPR001971Small ribosomal subunit protein uS11Family
K [auth k]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
K [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
L [auth l]IPR006032Small ribosomal subunit protein uS12Family
L [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth l]IPR005679Ribosomal protein uS12, bacterial-typeFamily
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
N [auth n]IPR001209Small ribosomal subunit protein uS14Family
N [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth n]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
O [auth o]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
O [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth o]IPR000589Small ribosomal subunit protein uS15Family
P [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth p]IPR000307Small ribosomal subunit protein bS16Family
Q [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
Q [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth q]IPR000266Small ribosomal subunit protein uS17Family
R [auth r]IPR001648Small ribosomal subunit protein bS18Family
R [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
S [auth s]IPR002222Small ribosomal subunit protein uS19Family
S [auth s]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
S [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
S [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
T [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
T [auth t]IPR002583Small ribosomal subunit protein bS20Family
U [auth u]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
U [auth u]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
U [auth u]IPR001911Small ribosomal subunit protein bS21Family
X [auth x]IPR009061Putative DNA-binding domain superfamilyHomologous Superfamily
X [auth x]IPR000178Translation initiation factor IF-2, bacterial-likeFamily
X [auth x]IPR000795Translational (tr)-type GTP-binding domainDomain
X [auth x]IPR013575Initiation factor 2 associated domain, bacterialDomain
X [auth x]IPR006847Translation initiation factor IF-2, N-terminalDomain
X [auth x]IPR044145Translation initiation factor IF-2, domain IIDomain
X [auth x]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
X [auth x]IPR005225Small GTP-binding protein domainDomain
X [auth x]IPR015760Translation initiation factor IF- 2Family
X [auth x]IPR036925Translation initiation factor IF-2, domain 3 superfamilyHomologous Superfamily
X [auth x]IPR023115Translation initiation factor IF- 2, domain 3Domain
X [auth x]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AA [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
AA [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
AA [auth C]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
AA [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AA [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
AA [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
AA [auth C]IPR002171Large ribosomal subunit protein uL2Family
BA [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
BA [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
BA [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
BA [auth D]IPR000597Large ribosomal subunit protein uL3Family
CA [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
CA [auth E]IPR002136Large ribosomal subunit protein uL4Family
CA [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
C [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth c]IPR004087K Homology domainDomain
C [auth c]IPR004044K Homology domain, type 2Domain
C [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth c]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
C [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
DA [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
DA [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
DA [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
DA [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
DA [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
DA [auth F]IPR002132Large ribosomal subunit protein uL5Family
EA [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
EA [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
EA [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
EA [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
EA [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
FA [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
FA [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
FA [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
FA [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
FA [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
FA [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
FA [auth H]IPR000244Large ribosomal subunit protein bL9Family
GA [auth I]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
GA [auth I]IPR001790Large ribosomal subunit protein uL10Family
GA [auth I]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
GA [auth I]IPR022973Large ribosomal subunit protein uL10, bacterialFamily
GA [auth I]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
HA [auth J]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
HA [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
HA [auth J]IPR000911Ribosomal protein uL11Family
HA [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
HA [auth J]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
HA [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
HA [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
IA [auth L]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
IA [auth L]IPR005822Large ribosomal subunit protein uL13Family
IA [auth L]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
IA [auth L]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
JA [auth M]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
JA [auth M]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
JA [auth M]IPR000218Large ribosomal subunit protein uL14Family
JA [auth M]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
KA [auth N]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
KA [auth N]IPR021131Large ribosomal subunit protein uL15/eL18Domain
KA [auth N]IPR030878Large ribosomal subunit protein uL15Family
KA [auth N]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
KA [auth N]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
LA [auth O]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
LA [auth O]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
LA [auth O]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
LA [auth O]IPR016180Large ribosomal subunit protein uL16 domainDomain
LA [auth O]IPR047873Large ribosomal subunit protein uL16Family
MA [auth P]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
MA [auth P]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
MA [auth P]IPR000456Large ribosomal subunit protein bL17Family
D [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth d]IPR002942RNA-binding S4 domainDomain
D [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth d]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
D [auth d]IPR022801Small ribosomal subunit protein uS4Family
NA [auth Q]IPR005484Large ribosomal subunit protein uL18Family
NA [auth Q]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
OA [auth R]IPR001857Large ribosomal subunit protein bL19Family
OA [auth R]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
OA [auth R]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
OA [auth R]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
PA [auth S]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
PA [auth S]IPR005813Large ribosomal subunit protein bL20Family
QA [auth T]IPR028909Large ribosomal subunit protein bL21-likeFamily
QA [auth T]IPR001787Large ribosomal subunit protein bL21Family
QA [auth T]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
QA [auth T]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
RA [auth U]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
RA [auth U]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
RA [auth U]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
RA [auth U]IPR001063Large ribosomal subunit protein uL22Family
RA [auth U]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
SA [auth V]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
SA [auth V]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
SA [auth V]IPR013025Large ribosomal subunit protein uL23-likeFamily
TA [auth W]IPR003256Large ribosomal subunit protein uL24Family
TA [auth W]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
TA [auth W]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
TA [auth W]IPR005824KOWDomain
TA [auth W]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
TA [auth W]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
UA [auth X]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
UA [auth X]IPR001021Ribosomal protein bL25, long-formFamily
UA [auth X]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
UA [auth X]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
UA [auth X]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
UA [auth X]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
VA [auth Y]IPR001684Large ribosomal subunit protein bL27Family
VA [auth Y]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
WA [auth Z]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
WA [auth Z]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
WA [auth Z]IPR026569Large ribosomal subunit protein bL28Family
WA [auth Z]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
E [auth e]IPR000851Small ribosomal subunit protein uS5Family
E [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth e]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
E [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
XA [auth 1]IPR001854Large ribosomal subunit protein uL29Family
XA [auth 1]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
XA [auth 1]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
YA [auth 2]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
YA [auth 2]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
YA [auth 2]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
ZA [auth 3]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
ZA [auth 3]IPR027491Large ribosomal subunit protein bL31 type AFamily
ZA [auth 3]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
ZA [auth 3]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
AB [auth 4]IPR002677Large ribosomal subunit protein bL32Family
AB [auth 4]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AB [auth 4]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
BB [auth 5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BB [auth 5]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
BB [auth 5]IPR001705Large ribosomal subunit protein bL33Family
BB [auth 5]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
CB [auth 6]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
CB [auth 6]IPR000271Large ribosomal subunit protein bL34Family
DB [auth 7]IPR021137Large ribosomal subunit protein bL35-likeFamily
DB [auth 7]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
DB [auth 7]IPR001706Large ribosomal subunit protein bL35Family
DB [auth 7]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
EB [auth 8]IPR000473Large ribosomal subunit protein bL36Family
EB [auth 8]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth g]IPR000235Small ribosomal subunit protein uS7Family
G [auth g]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
G [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
H [auth h]IPR000630Small ribosomal subunit protein uS8Family
H [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
H [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
I [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth i]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
I [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth i]IPR000754Small ribosomal subunit protein uS9Family
I [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily