Download MendeleyCryoEM reveals that ribosomes in microsporidian spores are locked in a dimeric hibernating state
McLaren, M., Conners, R., Isupov, M.N., Gil-Diez, P., Gambelli, L., Gold, V.A.M., Walter, A., Connell, S.R., Williams, B., Daum, B.(2023) Nat Microbiol
7QCA
Spraguea lophii ribosome
- PDB DOI: https://doi.org/10.2210/pdb7QCA/pdb
- NAKB: 7QCA
- EM Map EMD-13892: EMDB EMDataResource
- Classification: RIBOSOME
- Organism(s): Spraguea lophii 42_110
- Expression System: Spraguea lophii
- Mutation(s): No
- Deposited: 2021-11-22 Released: 2022-11-30
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.79 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
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Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L8 | C [auth LA0] | 246 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_78 |  |
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uL15 LAA | D [auth LAA] | 147 | Spraguea lophii 42_110 | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
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Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L3 | E [auth LB0] | 392 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_68 |  |
UniProt | |||||
Find proteins for S7XFB1 (Spraguea lophii (strain 42_110)) Explore S7XFB1 Go to UniProtKB: S7XFB1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XFB1 | ||||
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Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L4 | F [auth LC0] | 328 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_73 |  |
UniProt | |||||
Find proteins for S7WCM8 (Spraguea lophii (strain 42_110)) Explore S7WCM8 Go to UniProtKB: S7WCM8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7WCM8 | ||||
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Entity ID: 7 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L3 | G [auth LCC] | 110 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_69 |  |
UniProt | |||||
Find proteins for S7WAY0 (Spraguea lophii (strain 42_110)) Explore S7WAY0 Go to UniProtKB: S7WAY0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7WAY0 | ||||
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Entity ID: 8 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L5 | H [auth LD0] | 291 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_75 |  |
UniProt | |||||
Find proteins for S7XIG7 (Spraguea lophii (strain 42_110)) Explore S7XIG7 Go to UniProtKB: S7XIG7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XIG7 | ||||
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Entity ID: 9 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L31 | I [auth LDD] | 110 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2196 |  |
UniProt | |||||
Find proteins for S7XW48 (Spraguea lophii (strain 42_110)) Explore S7XW48 Go to UniProtKB: S7XW48 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XW48 | ||||
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Entity ID: 10 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L6 | J [auth LE0] | 171 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2210 |  |
UniProt | |||||
Find proteins for S7W5S3 (Spraguea lophii (strain 42_110)) Explore S7W5S3 Go to UniProtKB: S7W5S3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7W5S3 | ||||
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Entity ID: 11 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L32 | K [auth LEE] | 139 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_70 |  |
UniProt | |||||
Find proteins for S7XKE0 (Spraguea lophii (strain 42_110)) Explore S7XKE0 Go to UniProtKB: S7XKE0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XKE0 | ||||
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Entity ID: 12 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L7 | L [auth LF0] | 235 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_76 |  |
UniProt | |||||
Find proteins for S7W946 (Spraguea lophii (strain 42_110)) Explore S7W946 Go to UniProtKB: S7W946 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7W946 | ||||
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Entity ID: 13 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L35a | M [auth LFF] | 111 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_71 |  |
UniProt | |||||
Find proteins for S7W662 (Spraguea lophii (strain 42_110)) Explore S7W662 Go to UniProtKB: S7W662 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7W662 | ||||
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Entity ID: 14 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L8 | N [auth LG0] | 206 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_77 |  |
UniProt | |||||
Find proteins for S7XU63 (Spraguea lophii (strain 42_110)) Explore S7XU63 Go to UniProtKB: S7XU63 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XU63 | ||||
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Entity ID: 15 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L34 | O [auth LGG] | 106 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_1567 |  |
UniProt | |||||
Find proteins for S7W7C6 (Spraguea lophii (strain 42_110)) Explore S7W7C6 Go to UniProtKB: S7W7C6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7W7C6 | ||||
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Entity ID: 16 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L9 | P [auth LH0] | 187 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_79 |  |
UniProt | |||||
Find proteins for S7XRZ9 (Spraguea lophii (strain 42_110)) Explore S7XRZ9 Go to UniProtKB: S7XRZ9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XRZ9 | ||||
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Entity ID: 17 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal L29 protein | Q [auth LHH] | 119 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2194 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
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Entity ID: 18 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| S60 ribosomal protein L10 | R [auth LI0] | 218 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_1601 |  |
UniProt | |||||
Find proteins for S7WBF8 (Spraguea lophii (strain 42_110)) Explore S7WBF8 Go to UniProtKB: S7WBF8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7WBF8 | ||||
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Entity ID: 19 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L36 | S [auth LII] | 98 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_72 |  |
UniProt | |||||
Find proteins for S7WED1 (Spraguea lophii (strain 42_110)) Explore S7WED1 Go to UniProtKB: S7WED1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7WED1 | ||||
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| |||||
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Entity ID: 20 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L11 | T [auth LJ0] | 171 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_56 |  |
UniProt | |||||
Find proteins for S7WB69 (Spraguea lophii (strain 42_110)) Explore S7WB69 Go to UniProtKB: S7WB69 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7WB69 | ||||
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Entity ID: 21 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| eL37 LJJ | U [auth LJJ] | 92 | Spraguea lophii 42_110 | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
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Entity ID: 22 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L13 | V [auth LL0] | 165 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_32 |  |
UniProt | |||||
Find proteins for S7XVM9 (Spraguea lophii (strain 42_110)) Explore S7XVM9 Go to UniProtKB: S7XVM9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XVM9 | ||||
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| |||||
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Entity ID: 23 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L39 | W [auth LLL] | 52 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2202 |  |
UniProt | |||||
Find proteins for S7XTP1 (Spraguea lophii (strain 42_110)) Explore S7XTP1 Go to UniProtKB: S7XTP1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XTP1 | ||||
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| |||||
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Entity ID: 24 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| eL14 LM0 | X [auth LM0] | 122 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_1179 |  |
UniProt | |||||
Find proteins for S7XVN9 (Spraguea lophii (strain 42_110)) Explore S7XVN9 Go to UniProtKB: S7XVN9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XVN9 | ||||
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Entity ID: 25 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin | Y [auth LMM] | 127 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2019 |  |
UniProt | |||||
Find proteins for S7XSQ3 (Spraguea lophii (strain 42_110)) Explore S7XSQ3 Go to UniProtKB: S7XSQ3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XSQ3 | ||||
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Entity ID: 26 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L15 | Z [auth LN0] | 204 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_1565 |  |
UniProt | |||||
Find proteins for S7W7A2 (Spraguea lophii (strain 42_110)) Explore S7W7A2 Go to UniProtKB: S7W7A2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7W7A2 | ||||
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Entity ID: 27 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L13A | AA [auth LO0] | 198 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_1564 |  |
UniProt | |||||
Find proteins for S7XUD8 (Spraguea lophii (strain 42_110)) Explore S7XUD8 Go to UniProtKB: S7XUD8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XUD8 | ||||
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| |||||
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Entity ID: 28 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L44 | BA [auth LOO] | 104 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_74 |  |
UniProt | |||||
Find proteins for S7XL20 (Spraguea lophii (strain 42_110)) Explore S7XL20 Go to UniProtKB: S7XL20 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XL20 | ||||
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Entity ID: 29 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L17 | CA [auth LP0] | 167 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_58 |  |
UniProt | |||||
Find proteins for S7WDR4 (Spraguea lophii (strain 42_110)) Explore S7WDR4 Go to UniProtKB: S7WDR4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7WDR4 | ||||
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Entity ID: 30 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L37a | DA [auth LPP] | 89 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2590 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
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Entity ID: 31 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L18 | EA [auth LQ0] | 183 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_59 |  |
UniProt | |||||
Find proteins for S7WAI2 (Spraguea lophii (strain 42_110)) Explore S7WAI2 Go to UniProtKB: S7WAI2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7WAI2 | ||||
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Entity ID: 32 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L19 | FA [auth LR0] | 168 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_60 |  |
UniProt | |||||
Find proteins for S7WBY9 (Spraguea lophii (strain 42_110)) Explore S7WBY9 Go to UniProtKB: S7WBY9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7WBY9 | ||||
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Entity ID: 33 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L20 | GA [auth LS0] | 171 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_61 |  |
UniProt | |||||
Find proteins for S7WAG4 (Spraguea lophii (strain 42_110)) Explore S7WAG4 Go to UniProtKB: S7WAG4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7WAG4 | ||||
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Entity ID: 34 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60s ribosomal protein L21 | HA [auth LT0] | 158 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_62 |  |
UniProt | |||||
Find proteins for S7W8F6 (Spraguea lophii (strain 42_110)) Explore S7W8F6 Go to UniProtKB: S7W8F6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7W8F6 | ||||
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Entity ID: 35 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L22 | IA [auth LU0] | 113 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_63 |  |
UniProt | |||||
Find proteins for S7W958 (Spraguea lophii (strain 42_110)) Explore S7W958 Go to UniProtKB: S7W958 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7W958 | ||||
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Entity ID: 36 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L23 | JA [auth LV0] | 142 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2233 |  |
UniProt | |||||
Find proteins for S7XLC4 (Spraguea lophii (strain 42_110)) Explore S7XLC4 Go to UniProtKB: S7XLC4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XLC4 | ||||
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Entity ID: 37 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L24E | KA [auth LW0] | 131 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_1566 |  |
UniProt | |||||
Find proteins for S7XSY2 (Spraguea lophii (strain 42_110)) Explore S7XSY2 Go to UniProtKB: S7XSY2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XSY2 | ||||
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Entity ID: 38 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L23a | LA [auth LX0] | 113 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_64 |  |
UniProt | |||||
Find proteins for S7XFW8 (Spraguea lophii (strain 42_110)) Explore S7XFW8 Go to UniProtKB: S7XFW8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7XFW8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
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Entity ID: 39 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L26 | MA [auth LY0] | 131 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_65 |  |
UniProt | |||||
Find proteins for S7W884 (Spraguea lophii (strain 42_110)) Explore S7W884 Go to UniProtKB: S7W884 | |||||
Entity Groups | |||||
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| UniProt Group | S7W884 | ||||
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Entity ID: 40 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L27 | NA [auth LZ0] | 153 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_66 |  |
UniProt | |||||
Find proteins for S7XU08 (Spraguea lophii (strain 42_110)) Explore S7XU08 Go to UniProtKB: S7XU08 | |||||
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| UniProt Group | S7XU08 | ||||
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Entity ID: 42 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S0 | PA [auth SA0] | 233 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_25 |  |
UniProt | |||||
Find proteins for S7W8R1 (Spraguea lophii (strain 42_110)) Explore S7W8R1 Go to UniProtKB: S7W8R1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S7W8R1 | ||||
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Entity ID: 43 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S26 | QA [auth SAA] | 102 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_1572 |  |
UniProt | |||||
Find proteins for S7W9M7 (Spraguea lophii (strain 42_110)) Explore S7W9M7 Go to UniProtKB: S7W9M7 | |||||
Entity Groups | |||||
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| UniProt Group | S7W9M7 | ||||
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Entity ID: 44 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| eS1 SB0 | RA [auth SB0] | 230 | Spraguea lophii 42_110 | Mutation(s): 0 |  |
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Entity ID: 45 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| eS27 SBB | SA [auth SBB] | 82 | Spraguea lophii 42_110 | Mutation(s): 0 |  |
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Entity ID: 46 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S2 | TA [auth SC0] | 248 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2189 |  |
UniProt | |||||
Find proteins for S7W7R5 (Spraguea lophii (strain 42_110)) Explore S7W7R5 Go to UniProtKB: S7W7R5 | |||||
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| UniProt Group | S7W7R5 | ||||
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Entity ID: 47 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| eS28 SCC | UA [auth SCC] | 65 | Spraguea lophii 42_110 | Mutation(s): 0 |  |
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Entity ID: 48 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S3 | VA [auth SD0] | 242 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_40 |  |
UniProt | |||||
Find proteins for S7WAW0 (Spraguea lophii (strain 42_110)) Explore S7WAW0 Go to UniProtKB: S7WAW0 | |||||
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| UniProt Group | S7WAW0 | ||||
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Entity ID: 49 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S29 | WA [auth SDD] | 65 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2174 |  |
UniProt | |||||
Find proteins for S7XJB1 (Spraguea lophii (strain 42_110)) Explore S7XJB1 Go to UniProtKB: S7XJB1 | |||||
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| UniProt Group | S7XJB1 | ||||
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Entity ID: 50 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S4 | XA [auth SE0] | 280 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_43 |  |
UniProt | |||||
Find proteins for S7XG51 (Spraguea lophii (strain 42_110)) Explore S7XG51 Go to UniProtKB: S7XG51 | |||||
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| UniProt Group | S7XG51 | ||||
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Entity ID: 51 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| eS30 SEE | YA [auth SEE] | 60 | Spraguea lophii 42_110 | Mutation(s): 0 |  |
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Entity ID: 52 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S5 | ZA [auth SF0] | 195 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_44 |  |
UniProt | |||||
Find proteins for S7W4M9 (Spraguea lophii (strain 42_110)) Explore S7W4M9 Go to UniProtKB: S7W4M9 | |||||
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| UniProt Group | S7W4M9 | ||||
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Entity ID: 53 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin/40s ribosomal protein S27a fusion | AB [auth SFF] | 150 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2039 |  |
UniProt | |||||
Find proteins for S7W9X5 (Spraguea lophii (strain 42_110)) Explore S7W9X5 Go to UniProtKB: S7W9X5 | |||||
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| UniProt Group | S7W9X5 | ||||
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Entity ID: 54 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S6 | BB [auth SG0] | 230 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_45 |  |
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Entity ID: 55 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Guanine nucleotide binding protein beta subunit | CB [auth SGG] | 326 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2232 |  |
UniProt | |||||
Find proteins for S7XVG3 (Spraguea lophii (strain 42_110)) Explore S7XVG3 Go to UniProtKB: S7XVG3 | |||||
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| UniProt Group | S7XVG3 | ||||
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Entity ID: 56 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S7 | DB [auth SH0] | 164 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_46 |  |
UniProt | |||||
Find proteins for S7XV29 (Spraguea lophii (strain 42_110)) Explore S7XV29 Go to UniProtKB: S7XV29 | |||||
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| UniProt Group | S7XV29 | ||||
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Entity ID: 57 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S8 | EB [auth SI0] | 173 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_47 |  |
UniProt | |||||
Find proteins for S7XGW2 (Spraguea lophii (strain 42_110)) Explore S7XGW2 Go to UniProtKB: S7XGW2 | |||||
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| UniProt Group | S7XGW2 | ||||
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Entity ID: 58 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S9 | FB [auth SJ0] | 184 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_48 |  |
UniProt | |||||
Find proteins for S7W8E3 (Spraguea lophii (strain 42_110)) Explore S7W8E3 Go to UniProtKB: S7W8E3 | |||||
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| UniProt Group | S7W8E3 | ||||
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Entity ID: 59 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S10 | GB [auth SK0] | 107 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_26 |  |
UniProt | |||||
Find proteins for S7XU48 (Spraguea lophii (strain 42_110)) Explore S7XU48 Go to UniProtKB: S7XU48 | |||||
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| UniProt Group | S7XU48 | ||||
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Entity ID: 60 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S11 | HB [auth SL0] | 155 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_27 |  |
UniProt | |||||
Find proteins for S7W8R0 (Spraguea lophii (strain 42_110)) Explore S7W8R0 Go to UniProtKB: S7W8R0 | |||||
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| UniProt Group | S7W8R0 | ||||
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Entity ID: 61 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S12 | IB [auth SM0] | 130 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_28 |  |
UniProt | |||||
Find proteins for S7W7D2 (Spraguea lophii (strain 42_110)) Explore S7W7D2 Go to UniProtKB: S7W7D2 | |||||
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| UniProt Group | S7W7D2 | ||||
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Entity ID: 62 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S13 | JB [auth SN0] | 143 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_29 |  |
UniProt | |||||
Find proteins for S7XVZ9 (Spraguea lophii (strain 42_110)) Explore S7XVZ9 Go to UniProtKB: S7XVZ9 | |||||
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| UniProt Group | S7XVZ9 | ||||
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Entity ID: 63 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S14 | KB [auth SO0] | 135 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_30 |  |
UniProt | |||||
Find proteins for S7W6I0 (Spraguea lophii (strain 42_110)) Explore S7W6I0 Go to UniProtKB: S7W6I0 | |||||
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| UniProt Group | S7W6I0 | ||||
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Entity ID: 64 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein S19 | LB [auth SP0] | 163 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_1570 |  |
UniProt | |||||
Find proteins for S7XKY9 (Spraguea lophii (strain 42_110)) Explore S7XKY9 Go to UniProtKB: S7XKY9 | |||||
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| UniProt Group | S7XKY9 | ||||
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Entity ID: 65 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S16 | MB [auth SQ0] | 143 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2103 |  |
UniProt | |||||
Find proteins for S7WDU9 (Spraguea lophii (strain 42_110)) Explore S7WDU9 Go to UniProtKB: S7WDU9 | |||||
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| UniProt Group | S7WDU9 | ||||
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Entity ID: 66 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| eS17 SR0 | NB [auth SR0] | 120 | Spraguea lophii 42_110 | Mutation(s): 0 |  |
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Entity ID: 67 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S18 | OB [auth SS0] | 160 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_33 |  |
UniProt | |||||
Find proteins for S7XJA1 (Spraguea lophii (strain 42_110)) Explore S7XJA1 Go to UniProtKB: S7XJA1 | |||||
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| UniProt Group | S7XJA1 | ||||
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Entity ID: 68 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S Ribosomal protein S19 | PB [auth ST0] | 143 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_34 |  |
UniProt | |||||
Find proteins for S7W7P5 (Spraguea lophii (strain 42_110)) Explore S7W7P5 Go to UniProtKB: S7W7P5 | |||||
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| UniProt Group | S7W7P5 | ||||
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Entity ID: 69 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S20 | QB [auth SU0] | 119 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_35 |  |
UniProt | |||||
Find proteins for S7W986 (Spraguea lophii (strain 42_110)) Explore S7W986 Go to UniProtKB: S7W986 | |||||
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| UniProt Group | S7W986 | ||||
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Entity ID: 70 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein S21E | RB [auth SV0] | 67 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_2726 |  |
UniProt | |||||
Find proteins for S7WAC1 (Spraguea lophii (strain 42_110)) Explore S7WAC1 Go to UniProtKB: S7WAC1 | |||||
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| UniProt Group | S7WAC1 | ||||
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Entity ID: 71 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S15A | SB [auth SW0] | 128 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_31 |  |
UniProt | |||||
Find proteins for S7XK92 (Spraguea lophii (strain 42_110)) Explore S7XK92 Go to UniProtKB: S7XK92 | |||||
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| UniProt Group | S7XK92 | ||||
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Entity ID: 72 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uS12 SX0 | TB [auth SX0] | 141 | Spraguea lophii 42_110 | Mutation(s): 0 |  |
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Entity ID: 73 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40s ribosomal protein s24 | UB [auth SY0] | 146 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_37 |  |
UniProt | |||||
Find proteins for S7W8J5 (Spraguea lophii (strain 42_110)) Explore S7W8J5 Go to UniProtKB: S7W8J5 | |||||
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| UniProt Group | S7W8J5 | ||||
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Entity ID: 74 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S25 | VB [auth SZ0] | 128 | Spraguea lophii 42_110 | Mutation(s): 0 Gene Names: SLOPH_1571 |  |
UniProt | |||||
Find proteins for S7WAV8 (Spraguea lophii (strain 42_110)) Explore S7WAV8 Go to UniProtKB: S7WAV8 | |||||
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| UniProt Group | S7WAV8 | ||||
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Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| RNA 23S | A [auth L50] | 2,618 | Spraguea lophii 42_110 |  | |
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Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| RNA 5S | B [auth L70] | 119 | Spraguea lophii 42_110 |  | |
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Entity ID: 41 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| RNA SSU | OA [auth S60] | 1,368 | Spraguea lophii 42_110 |  | |
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN (Subject of Investigation/LOI) Query on ZN | BM [auth LOO] CM [auth LPP] QP [auth SAA] RP [auth SBB] SP [auth SDD] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| K Query on K | AC [auth L50] AD [auth L50] AE [auth L50] AF [auth L50] AG [auth L50] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| MG Query on MG | AI [auth L50] AJ [auth L50] AK [auth L50] AL [auth L50] AO [auth S60] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.79 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | REFMAC | |
| RECONSTRUCTION | RELION | 3.1 |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-11-30 Deposition Author(s): Gil Diez, P., McLaren, M., Isupov, M.N., Daum, B., Conners, R., Williams, B.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Wellcome Trust | United Kingdom | 212439/Z/18/Z |
Revision History (Full details and data files)
- Version 1.0: 2022-11-30
Type: Initial release - Version 1.1: 2023-12-13
Changes: Data collection, Database references, Refinement description - Version 1.2: 2023-12-20
Changes: Database references
