7YF0

In situ structure of polymerase complex of mammalian reovirus in the core


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

In situ structures of polymerase complex of mammalian reovirus illuminate RdRp activation and transcription regulation.

Bao, K.Zhang, X.Li, D.Sun, W.Sun, Z.Wang, J.Zhu, P.

(2022) Proc Natl Acad Sci U S A 119: e2203054119-e2203054119

  • DOI: https://doi.org/10.1073/pnas.2203054119
  • Primary Citation of Related Structures:  
    7YED, 7YEV, 7YEZ, 7YF0, 7YFE

  • PubMed Abstract: 

    Mammalian reovirus (reovirus) is a multilayered, turreted member of Reoviridae characterized by transcription of dsRNA genome within the innermost capsid shell. Here, we present high-resolution in situ structures of reovirus transcriptase complex in an intact double-layered virion, and in the uncoated single-layered core particles in the unloaded, reloaded, pre-elongation, and elongation states, respectively, obtained by cryo-electron microscopy and sub-particle reconstructions. At the template entry of RNA-dependent RNA polymerase (RdRp), the RNA-loading region gets flexible after uncoating resulting in the unloading of terminal genomic RNA and inactivity of transcription. However, upon adding transcriptional substrates, the RNA-loading region is recovered leading the RNAs loaded again. The priming loop in RdRp was found to play a critical role in regulating transcription, which hinders the elongation of transcript in virion and triggers the rearrangement of RdRp C-terminal domain (CTD) during elongation, resulting in splitting of template-transcript hybrid and opening of transcript exit. With the integration of these structures, a transcriptional model of reovirus with five states is proposed. Our structures illuminate the RdRp activation and regulation of the multilayered turreted reovirus.


  • Organizational Affiliation

    National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RNA helicase1,275Mammalian orthoreovirus 3Mutation(s): 0 
EC: 3.6.4.13
UniProt
Find proteins for C9E874 (Mammalian orthoreovirus 3)
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Go to UniProtKB:  C9E874
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC9E874
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Lambda-2 proteinK [auth H],
L [auth I],
M [auth J],
N [auth K],
O [auth L]
1,289Mammalian orthoreovirus 3Mutation(s): 0 
UniProt
Find proteins for C9E871 (Mammalian orthoreovirus 3)
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Go to UniProtKB:  C9E871
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UniProt GroupC9E871
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-directed RNA polymeraseP [auth R]1,267Mammalian orthoreovirus 3Mutation(s): 0 
EC: 2.7.7.48
UniProt
Find proteins for C9E870 (Mammalian orthoreovirus 3)
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Go to UniProtKB:  C9E870
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UniProt GroupC9E870
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Mu-2 proteinQ [auth U]736Mammalian orthoreovirus 3Mutation(s): 0 
UniProt
Find proteins for C9E872 (Mammalian orthoreovirus 3)
Explore C9E872 
Go to UniProtKB:  C9E872
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UniProt GroupC9E872
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31730023
National Natural Science Foundation of China (NSFC)China31521002

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-29
    Type: Initial release