7YLU

yeast TRiC-plp2-substrate complex at S1 TRiC-NPP state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.55 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis of plp2-mediated cytoskeletal protein folding by TRiC/CCT.

Han, W.Jin, M.Liu, C.Zhao, Q.Wang, S.Wang, Y.Yin, Y.Peng, C.Wang, Y.Cong, Y.

(2023) Sci Adv 9: eade1207-eade1207

  • DOI: https://doi.org/10.1126/sciadv.ade1207
  • Primary Citation of Related Structures:  
    7YLU, 7YLV, 7YLW, 7YLX, 7YLY

  • PubMed Abstract: 

    The cytoskeletal proteins tubulin and actin are the obligate substrates of TCP-1 ring complex/Chaperonin containing TCP-1 (TRiC/CCT), and their folding involves co-chaperone. Through cryo-electron microscopy analysis, we present a more complete picture of TRiC-assisted tubulin/actin folding along TRiC adenosine triphosphatase cycle, under the coordination of co-chaperone plp2. In the open S1/S2 states, plp2 and tubulin/actin engaged within opposite TRiC chambers. Notably, we captured an unprecedented TRiC-plp2-tubulin complex in the closed S3 state, engaged with a folded full-length β -tubulin and loaded with a guanosine triphosphate, and a plp2 occupying opposite rings. Another closed S4 state revealed an actin in the intermediate folding state and a plp2. Accompanying TRiC ring closure, plp2 translocation could coordinate substrate translocation on the CCT6 hemisphere, facilitating substrate stabilization and folding. Our findings reveal the folding mechanism of the major cytoskeletal proteins tubulin/actin under the coordination of the biogenesis machinery TRiC and plp2 and extend our understanding of the links between cytoskeletal proteostasis and related human diseases.


  • Organizational Affiliation

    State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai 200031, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit alphaA,
I [auth a]
559Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: TCP1CCT1YDR212WYD8142.13YD8142B.04
UniProt
Find proteins for P12612 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P12612 
Go to UniProtKB:  P12612
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12612
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit betaB,
J [auth b]
527Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT2BIN3TCP2YIL142W
UniProt
Find proteins for P39076 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P39076 
Go to UniProtKB:  P39076
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP39076
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit deltaC [auth D],
K [auth d]
528Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT4
UniProt
Find proteins for P39078 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P39078 
Go to UniProtKB:  P39078
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP39078
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit epsilonD [auth E],
L [auth e]
562Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT5TCP5YJR064WJ1752
UniProt
Find proteins for P40413 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40413 
Go to UniProtKB:  P40413
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40413
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit gammaE [auth G],
M [auth g]
534Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT3BIN2TCP3YJL014WJ1336
UniProt
Find proteins for P39077 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P39077 
Go to UniProtKB:  P39077
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP39077
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit etaF [auth H],
N [auth h]
550Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT7
UniProt
Find proteins for P42943 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P42943 
Go to UniProtKB:  P42943
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP42943
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit thetaG [auth Q],
O [auth q]
568Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT8YJL008CJ1374
UniProt
Find proteins for P47079 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P47079 
Go to UniProtKB:  P47079
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP47079
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit zetaH [auth Z],
P [auth z]
546Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT6TCP20TCP6YDR188WYD9395.21
UniProt
Find proteins for P39079 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P39079 
Go to UniProtKB:  P39079
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP39079
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Phosducin-like protein 2Q [auth P]286Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: PLP2VIAF1YOR281C
UniProt
Find proteins for Q12017 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12017 
Go to UniProtKB:  Q12017
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12017
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.55 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2023-03-29 
  • Deposition Author(s): Han, W.Y.

Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChina--

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-29
    Type: Initial release