7Z1Z

MVV strand transfer complex (STC) intasome in complex with LEDGF/p75 at 3.5 A resolution


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history



Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Pol polyprotein281Visna/maedi virus EV1 KV1772Mutation(s): 0 
Gene Names: pol
EC: 3.4.23 (PDB Primary Data), 2.7.7.49 (PDB Primary Data), 3.1.26.13 (PDB Primary Data), 3.1.13.2 (PDB Primary Data), 3.6.1.23 (PDB Primary Data), 2.7.7 (PDB Primary Data), 3.1 (PDB Primary Data)
UniProt
Find proteins for P35956 (Maedi visna virus (strain KV1772))
Explore P35956 
Go to UniProtKB:  P35956
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35956
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
PC4 and SFRS1-interacting proteinI [auth R],
J [auth Q]
95Homo sapiensMutation(s): 0 
Gene Names: PSIP1DFS70LEDGFPSIP2
UniProt & NIH Common Fund Data Resources
Find proteins for O75475 (Homo sapiens)
Explore O75475 
Go to UniProtKB:  O75475
PHAROS:  O75475
GTEx:  ENSG00000164985 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO75475
Sequence Annotations
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Entity ID: 3
MoleculeChains LengthOrganismImage
DNA (5'-D(*GP*CP*TP*GP*CP*GP*AP*GP*AP*TP*CP*CP*GP*CP*TP*CP*CP*GP*GP*TP*G)-3')K [auth X],
V [auth Y]
23DNA molecule
Sequence Annotations
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Entity ID: 4
MoleculeChains LengthOrganismImage
DNA (37-MER)L [auth W],
W [auth Z]
50DNA molecule
Sequence Annotations
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Entity ID: 5
MoleculeChains LengthOrganismImage
DNA (5'-D(P*TP*TP*GP*AP*TP*TP*AP*GP*GP*GP*TP*G)-3')M [auth U],
X [auth a]
23DNA molecule
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
AA [auth C]
BA [auth E]
CA [auth F]
DA [auth G]
EA [auth I]
AA [auth C],
BA [auth E],
CA [auth F],
DA [auth G],
EA [auth I],
FA [auth J],
GA [auth K],
HA [auth M],
IA [auth N],
JA [auth O],
Y [auth A],
Z [auth B]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIXdev-4213-000
MODEL REFINEMENTCoot

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
The Francis Crick InstituteUnited KingdomFC10061
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesP50AI150481

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-11
    Type: Initial release
  • Version 1.1: 2022-12-21
    Changes: Data collection, Database references