Download MendeleyStructure of the malaria vaccine candidate Pfs48/45 and its recognition by transmission blocking antibodies
Ko, K.T., Lennartz, F.L., Higgins, M.K.To be published.
7ZWI
Pfs48/45 C-terminal domain bound to fab fragment of monoclonal antibody 32F3
- PDB DOI: 10.2210/pdb7ZWI/pdb
- Classification: CELL ADHESION
- Organism(s): Plasmodium falciparum, Mus musculus
- Expression System: Drosophila melanogaster, Mus musculus
- Mutation(s): No
- Deposited: 2022-05-19 Released: 2022-06-22
- Funding Organization(s): Medical Research Council (MRC, United Kingdom), Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.217
- R-Value Work: 0.189
- R-Value Observed: 0.190
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Gametocyte surface protein P45/48 | A, D | 429 | Plasmodium falciparum | Mutation(s): 0 Gene Names: PF45/48, PFS45-48, PFS45/48, PF13_0247, PF3D7_1346700 |  |
UniProt | |||||
Find proteins for Q8I6T1 (Plasmodium falciparum (isolate 3D7)) Explore Q8I6T1 Go to UniProtKB: Q8I6T1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8I6T1 | ||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 32F3 heavy chain | B, E | 444 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 32F3 light chain | C, F | 213 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
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Oligosaccharides
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | G | 3 |  | N-Glycosylation | Oligosaccharides Interaction |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.217
- R-Value Work: 0.189
- R-Value Observed: 0.190
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.659 | α = 90 |
| b = 87.104 | β = 99.54 |
| c = 110.62 | γ = 90 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| PDB_EXTRACT | data extraction |
| xia2 | data reduction |
| xia2 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2022-05-19
- Released Date: 2022-06-22 Deposition Author(s): Ko, K.T., Lennartz, F.L., Higgins, M.K.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Medical Research Council (MRC, United Kingdom) | United Kingdom | MR/R001138/1 |
| Wellcome Trust | United Kingdom | 218482/Z/19/Z |
| Wellcome Trust | United Kingdom | 101020/Z/13/Z |
Revision History (Full details and data files)
- Version 1.0: 2022-06-22
Type: Initial release - Version 1.1: 2022-06-29
Changes: Derived calculations
