8AB2

Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in its apo form.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.185 

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in its apo form.

Robin, A.Y.Girard, E.Madern, D.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
L-lactate dehydrogenaseA337Cyanobacterium aponinumMutation(s): 0 
Gene Names: ldhCyan10605_1816
EC: 1.1.1.27
UniProt
Find proteins for K9Z684 (Cyanobacterium aponinum (strain PCC 10605))
Explore K9Z684 
Go to UniProtKB:  K9Z684
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupK9Z684
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
7MT (Subject of Investigation/LOI)
Query on 7MT

Download Ideal Coordinates CCD File 
B [auth A]Tb-Xo4
C20 H23 N5 O4 Tb
JWLMJALAUZUFRC-UHFFFAOYSA-L
 Ligand Interaction
TB
Query on TB

Download Ideal Coordinates CCD File 
C [auth A],
D [auth A],
E [auth A]
TERBIUM(III) ION
Tb
HKCRVXUAKWXBLE-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
F [auth A]1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.185 
  • Space Group: I 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 103.797α = 90
b = 103.797β = 90
c = 197.824γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
SCALAdata scaling
CRANK2phasing
MxCuBEdata collection
Cootmodel building

Structure Validation

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Ligand Structure Quality Assessment 



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentFranceprogram CrysFrag R&D booster region AuRA
Other governmentFranceProgram XO4_2.0 Pack ambition recherche region AuRA

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-03
    Type: Initial release