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CRYSTAL STRUCTURE OF ASPARAGINE SYNTHETASE B FROM ESCHERICHIA COLI External Resource: Annotation Chains Domain Info Class Fold Superfamily Family Domain Species Provenance Source (Version) A d1ct9a1 Alpha and beta proteins (a/b) Adenine nucleotide alpha hydrolase-like Adenine nucleotide alpha hydrolases-like N-type ATP pyrophosphatases Asparagine synthetase B, C-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08) A d1ct9a2 Alpha and beta proteins (a+b) Ntn hydrolase-like N-terminal nucleophile aminohydrolases (Ntn hydrolases) Class II glutamine amidotransferases Asparagine synthetase B, N-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08) B d1ct9b1 Alpha and beta proteins (a/b) Adenine nucleotide alpha hydrolase-like Adenine nucleotide alpha hydrolases-like N-type ATP pyrophosphatases Asparagine synthetase B, C-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08) B d1ct9b2 Alpha and beta proteins (a+b) Ntn hydrolase-like N-terminal nucleophile aminohydrolases (Ntn hydrolases) Class II glutamine amidotransferases Asparagine synthetase B, N-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08) C d1ct9c1 Alpha and beta proteins (a/b) Adenine nucleotide alpha hydrolase-like Adenine nucleotide alpha hydrolases-like N-type ATP pyrophosphatases Asparagine synthetase B, C-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08) C d1ct9c2 Alpha and beta proteins (a+b) Ntn hydrolase-like N-terminal nucleophile aminohydrolases (Ntn hydrolases) Class II glutamine amidotransferases Asparagine synthetase B, N-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08) D d1ct9d1 Alpha and beta proteins (a/b) Adenine nucleotide alpha hydrolase-like Adenine nucleotide alpha hydrolases-like N-type ATP pyrophosphatases Asparagine synthetase B, C-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08) D d1ct9d2 Alpha and beta proteins (a+b) Ntn hydrolase-like N-terminal nucleophile aminohydrolases (Ntn hydrolases) Class II glutamine amidotransferases Asparagine synthetase B, N-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) A SCOP2 Family Alpha subunit of glutamate synthase, GAT domain-like 8024378 4000340 SCOP2 (2022-06-29) A SCOP2 Family N-type ATP pyrophosphatases 8031830 4003831 SCOP2 (2022-06-29) A SCOP2 Superfamily Class II glutamine amidotransferases 8036757 3000131 SCOP2 (2022-06-29) A SCOP2 Superfamily Adenine nucleotide alpha hydrolases-like 8044208 3001593 SCOP2 (2022-06-29) B SCOP2B Superfamily Class II glutamine amidotransferases 8036757 3000131 SCOP2B (2022-06-29) B SCOP2B Superfamily Adenine nucleotide alpha hydrolases-like 8044208 3001593 SCOP2B (2022-06-29) C SCOP2B Superfamily Class II glutamine amidotransferases 8036757 3000131 SCOP2B (2022-06-29) C SCOP2B Superfamily Adenine nucleotide alpha hydrolases-like 8044208 3001593 SCOP2B (2022-06-29) D SCOP2B Superfamily Class II glutamine amidotransferases 8036757 3000131 SCOP2B (2022-06-29) D SCOP2B Superfamily Adenine nucleotide alpha hydrolases-like 8044208 3001593 SCOP2B (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) A UNK_F_TYPE e1ct9A1 A: a+b four layers X: Ntn/PP2C H: Ntn T: Class II glutamine amidotransferases F: UNK_F_TYPE ECOD (1.6) A Asn_synthase e1ct9A2 A: a/b three-layered sandwiches X: HUP domain-like H: HUP domains (From Topology) T: HUP domains F: Asn_synthase ECOD (1.6) B UNK_F_TYPE e1ct9B1 A: a+b four layers X: Ntn/PP2C H: Ntn T: Class II glutamine amidotransferases F: UNK_F_TYPE ECOD (1.6) B Asn_synthase e1ct9B2 A: a/b three-layered sandwiches X: HUP domain-like H: HUP domains (From Topology) T: HUP domains F: Asn_synthase ECOD (1.6) C UNK_F_TYPE e1ct9C1 A: a+b four layers X: Ntn/PP2C H: Ntn T: Class II glutamine amidotransferases F: UNK_F_TYPE ECOD (1.6) C Asn_synthase e1ct9C2 A: a/b three-layered sandwiches X: HUP domain-like H: HUP domains (From Topology) T: HUP domains F: Asn_synthase ECOD (1.6) D UNK_F_TYPE e1ct9D1 A: a+b four layers X: Ntn/PP2C H: Ntn T: Class II glutamine amidotransferases F: UNK_F_TYPE ECOD (1.6) D Asn_synthase e1ct9D2 A: a/b three-layered sandwiches X: HUP domain-like H: HUP domains (From Topology) T: HUP domains F: Asn_synthase ECOD (1.6)
Chain Domain Class Architecture Topology Homology Provenance Source (Version) A 3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domain CATH (4.3.0) A 3.40.50.620 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold HUPs CATH (4.3.0) B 3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domain CATH (4.3.0) B 3.40.50.620 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold HUPs CATH (4.3.0) C 3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domain CATH (4.3.0) C 3.40.50.620 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold HUPs CATH (4.3.0) D 3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domain CATH (4.3.0) D 3.40.50.620 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold HUPs CATH (4.3.0)
Chains Accession Name Description Comments Source PF13537 Glutamine amidotransferase domain (GATase_7) Glutamine amidotransferase domain This domain is a class-II glutamine amidotransferase domain found in a variety of enzymes such as asparagine synthetase and glutamine-fructose-6-phosphate transaminase. Domain PF00733 Asparagine synthase (Asn_synthase) Asparagine synthase This family is always found associated with Pfam:PF00310. Members of this family catalyse the conversion of aspartate to asparagine. Domain
Chains Polymer Molecular Function Biological Process Cellular Component ASPARAGINE SYNTHETASE B
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage Chains Enzyme Name Description Catalytic Residues asparagine synthase (glutamine-hydrolysing)
M-CSA #302 Asparagine synthetase B catalyses the ATP dependent formation of asparagine from aspartate using either glutamine or ammonia as a nitrogen source. The enzyme is a homodimer with two active sites [PMID:10587437] in each subunit, one responsible for glutamine hydrolysis and one for asparagine synthesis, separated by a hydrophobic intramolecular tunnel around 20A long [PMID:12706338]. Sequencing analysis has shown the synthetase to belong to the larger glutamine transferase family.
 View MoreDefined by 6 residues: ALA:A-1 LEU:A-50 ASN:A-74 GLY:A-75 THR:A-321 ARG:A-324
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M-CSA Motif Definition
Extent of motif is too large to support Structure Motif searching.