Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1m5wa_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd1m5wb_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Cd1m5wc_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Dd1m5wd_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ed1m5we_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Fd1m5wf_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Gd1m5wg_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Hd1m5wh_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyPyridoxine 5'-phosphate synthase 8020334 4003313 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPyridoxine 5'-phosphate synthase 8032714 3000586 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8032714 3000586 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8032714 3000586 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8032714 3000586 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8032714 3000586 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8032714 3000586 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8032714 3000586 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8032714 3000586 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APdxJe1m5wA1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
BPdxJe1m5wB1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
CPdxJe1m5wC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
DPdxJe1m5wD1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
EPdxJe1m5wE1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
FPdxJe1m5wF1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
GPdxJe1m5wG1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
HPdxJe1m5wH1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
B3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
C3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
D3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
E3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
F3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
G3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
H3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF03740Pyridoxal phosphate biosynthesis protein PdxJ (PdxJ)Pyridoxal phosphate biosynthesis protein PdxJMembers of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synt ...Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Pyridoxal phosphate biosynthetic protein pdxJ

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR036130Pyridoxine 5'-phosphate synthaseHomologous Superfamily
A, B, C, D, E
IPR013785Aldolase-type TIM barrelHomologous Superfamily
A, B, C, D, E
IPR004569Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJFamily