2RCD | pdb_00002rcd

CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION FROM DUF3225 FAMILY (ECA3500) FROM PECTOBACTERIUM ATROSEPTICUM SCRI1043 AT 2.32 A RESOLUTION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2rcda1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	BxeB1374-like	Uncharacterized protein ECA3500	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
A	d2rcda2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
B	d2rcdb2	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	BxeB1374-like	Uncharacterized protein ECA3500	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
B	d2rcdb3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
D	d2rcdd2	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	BxeB1374-like	Uncharacterized protein ECA3500	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
D	d2rcdd3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
C	d2rcdc2	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	BxeB1374-like	Uncharacterized protein ECA3500	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)
C	d2rcdc3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pectobacterium atrosepticum SCRI1043 ) [TaxId: 218491 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	BxeB1374-like	8024399	4002762	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	NTF2-like	8036778	3000472	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	NTF2-like	8036778	3000472	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	NTF2-like	8036778	3000472	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	NTF2-like	8036778	3000472	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF3225	e2rcdA1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: DUF3225	ECOD (1.6)
B	DUF3225	e2rcdB1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: DUF3225	ECOD (1.6)
D	DUF3225	e2rcdD1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: DUF3225	ECOD (1.6)
C	DUF3225	e2rcdC1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: DUF3225	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
B	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
D	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
C	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF11533	AtzH-like (AtzH-like)	AtzH-like	This bacterial family of proteins includes AtzH from Pseudomonas sp. sp. AtzH is thought to be an amidase responsible for converting 1,3-dicarboxyurea to allophanate. This protein, which adopts a dimeric assembly, shows a seven-stranded anti-parallel ...	This bacterial family of proteins includes AtzH from Pseudomonas sp. sp. AtzH is thought to be an amidase responsible for converting 1,3-dicarboxyurea to allophanate. This protein, which adopts a dimeric assembly, shows a seven-stranded anti-parallel beta- sheet and three helices [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR024507	AtzH-like	Family
A, B, C, D	IPR032710	NTF2-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.