Model of the human eIF3 PCI-MPN octamer docked into the 43S-HCV IRES EM map
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth C] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8093051 | 3000034 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | TPR-like | 8093044 | 3001345 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8091486 | 3000034 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | TPR-like | 8091483 | 3001345 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | JAB1/MPN domain-like | 8053242 | 3001105 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | EIF3 subunit F C-terminal domain-like | 8053241 | 3002167 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | JAB1/MPN domain-like | 8053284 | 3001105 | SCOP2B (2022-06-29) |
F [auth K] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8002864 | 3000034 | SCOP2B (2022-06-29) |
F [auth K] | SCOP2B Superfamily | ARM repeat-like | 8002866 | 3000116 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
G [auth L] | Paf67_2nd | e3j8bL2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Paf67_2nd | ECOD (1.6) |
G [auth L] | Paf67_1st | e3j8bL1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Paf67_1st | ECOD (1.6) |
A | PCI | e3j8bA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PCI | ECOD (1.6) |
A | KOG2072 | e3j8bA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2072 | ECOD (1.6) |
B [auth C] | PCI | e3j8bC2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PCI | ECOD (1.6) |
B [auth C] | eIF-3c_N | e3j8bC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: eIF-3c_N | ECOD (1.6) |
C [auth E] | PCI | e3j8bE2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PCI | ECOD (1.6) |
C [auth E] | eIF3_N | e3j8bE1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: eIF3_N | ECOD (1.6) |
D [auth F] | JAB_1 | e3j8bF1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: JAB_1 | ECOD (1.6) |
E [auth H] | JAB_1 | e3j8bH1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: JAB_1 | ECOD (1.6) |
F [auth K] | CSN8_PSD8_EIF3K_C | e3j8bK1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: CSN8_PSD8_EIF3K_C | ECOD (1.6) |
F [auth K] | SAC3_GANP_1st | e3j8bK2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: SAC3_GANP_1st | ECOD (1.6) |
H [auth M] | PCI | e3j8bM2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PCI | ECOD (1.6) |
H [auth M] | KOG2753_1st | e3j8bM1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2753_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22591 | eIF3a, PCI domain, TPR-like region (eIF3a_PCI_TPR-like) | eIF3a, PCI domain, TPR-like region | - | Repeat | |
PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain | |
B [auth C] | PF05470 | Eukaryotic translation initiation factor 3 subunit 8 N-terminus (eIF-3c_N) | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | - | Repeat |
B [auth C] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
C [auth E] | PF09440 | eIF3 subunit 6 N terminal domain (eIF3_N) | eIF3 subunit 6 N terminal domain | This is the N terminal domain of subunit 6 translation initiation factor eIF3. | Domain |
C [auth E] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
E [auth H] | PF19445 | C-terminal region of eIF3h (eIF3h_C) | C-terminal region of eIF3h | - | Family |
F [auth K] | PF10075 | CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K) | CSN8/PSMD8/EIF3K family | - | Family |
H [auth M] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |