4AAY
Crystal Structure of the arsenite oxidase protein complex from Rhizobium species strain NT-26
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d4aayb_ | All beta proteins | ISP domain | ISP domain | automated matches | automated matches | (Pseudorhizobium banfieldiae ) [TaxId: 1125847 ], | SCOPe (2.08) |
D | d4aayd_ | All beta proteins | ISP domain | ISP domain | automated matches | automated matches | (Pseudorhizobium banfieldiae ) [TaxId: 1125847 ], | SCOPe (2.08) |
F | d4aayf_ | All beta proteins | ISP domain | ISP domain | automated matches | automated matches | (Pseudorhizobium banfieldiae ) [TaxId: 1125847 ], | SCOPe (2.08) |
H | d4aayh_ | All beta proteins | ISP domain | ISP domain | automated matches | automated matches | (Pseudorhizobium banfieldiae ) [TaxId: 1125847 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ADC-like | 8101088 | 3001132 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8099846 | 3001453 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8099846 | 3001453 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ADC-like | 8101088 | 3001132 | SCOP2B (2022-06-29) |
E | SCOP2 Family | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8099845 | 4000801 | SCOP2 (2022-06-29) |
E | SCOP2 Family | Formate dehydrogenase/DMSO reductase, C-terminal domain | 8101087 | 4002360 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8099846 | 3001453 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | ADC-like | 8101088 | 3001132 | SCOP2 (2022-06-29) |
G | SCOP2B Superfamily | ADC-like | 8101088 | 3001132 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8099846 | 3001453 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ISP domain | 8099848 | 3000233 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ISP domain | 8099848 | 3000233 | SCOP2B (2022-06-29) |
F | SCOP2 Family | Rieske iron-sulfur protein (ISP) | 8099847 | 4001667 | SCOP2 (2022-06-29) |
F | SCOP2 Superfamily | ISP domain | 8099848 | 3000233 | SCOP2 (2022-06-29) |
H | SCOP2B Superfamily | ISP domain | 8099848 | 3000233 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Molydop_binding | e4aayA4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
A | arsenite_ox_L | e4aayA3 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: arsenite_ox_L | ECOD (1.6) |
A | Molybdopterin_2nd | e4aayA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
A | Molybdopterin_1st_1 | e4aayA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_1st_1 | ECOD (1.6) |
C | Molydop_binding | e4aayC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
C | arsenite_ox_L | e4aayC3 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: arsenite_ox_L | ECOD (1.6) |
C | Molybdopterin_2nd | e4aayC2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
C | Molybdopterin_1st_1 | e4aayC4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_1st_1 | ECOD (1.6) |
E | Molydop_binding | e4aayE2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
E | arsenite_ox_L | e4aayE1 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: arsenite_ox_L | ECOD (1.6) |
E | Molybdopterin_2nd | e4aayE4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
E | Molybdopterin_1st_1 | e4aayE3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_1st_1 | ECOD (1.6) |
G | Molydop_binding | e4aayG3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
G | arsenite_ox_L | e4aayG2 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: arsenite_ox_L | ECOD (1.6) |
G | Molybdopterin_2nd | e4aayG4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
G | Molybdopterin_1st_1 | e4aayG1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_1st_1 | ECOD (1.6) |
B | arsenite_ox_S | e4aayB1 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: arsenite_ox_S | ECOD (1.6) |
D | arsenite_ox_S | e4aayD2 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: arsenite_ox_S | ECOD (1.6) |
F | arsenite_ox_S | e4aayF2 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: arsenite_ox_S | ECOD (1.6) |
H | arsenite_ox_S | e4aayH2 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: arsenite_ox_S | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01568 | Molydopterin dinucleotide binding domain (Molydop_binding) | Molydopterin dinucleotide binding domain | This domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entir ... | Domain | |
PF18465 | Rieske 3Fe-4S (Rieske_3) | Rieske 3Fe-4S | This domain is comprised of the iron-sulphur cluster and Rieske subunit found in the large subunit of arsenite oxidase. Arsenite oxidase is a 100 kDa molybdenum- and iron-sulfur-containing protein located on the outer surface of the inner membrane of ... | Domain | |
PF00384 | Molybdopterin oxidoreductase (Molybdopterin) | Molybdopterin oxidoreductase | - | Family | |
PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
AROA | ||||
AROB | - | - |