4CR4

Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 1]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036787 3000131 SCOP2B (2022-06-29)
E [auth 5]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079504 3000131 SCOP2B (2022-06-29)
H [auth A]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036842 3000131 SCOP2B (2022-06-29)
I [auth B]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064048 3000131 SCOP2B (2022-06-29)
J [auth C]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064020 3000131 SCOP2B (2022-06-29)
K [auth D]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064012 3000131 SCOP2B (2022-06-29)
L [auth E]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064026 3000131 SCOP2B (2022-06-29)
M [auth F]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064066 3000131 SCOP2B (2022-06-29)
N [auth G]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079169 3000131 SCOP2B (2022-06-29)
Y [auth R]SCOP2B SuperfamilyWinged helix DNA-binding domain 8057044 3000034 SCOP2B (2022-06-29)
Y [auth R]SCOP2B SuperfamilyTPR-like 8057042 3001345 SCOP2B (2022-06-29)
BA [auth U]SCOP2 FamilyJAB1/Mov34/MPN/PAD-1/JAMM domain-like 8048968 4006292 SCOP2 (2022-06-29)
BA [auth U]SCOP2 FamilyEIF3 subunit F C-terminal domain-like 8053271 4005957 SCOP2 (2022-06-29)
BA [auth U]SCOP2 SuperfamilyJAB1/MPN domain-like 8053272 3001105 SCOP2 (2022-06-29)
BA [auth U]SCOP2 SuperfamilyEIF3 subunit F C-terminal domain-like 8053273 3002167 SCOP2 (2022-06-29)
CA [auth V]SCOP2B SuperfamilyJAB1/MPN domain-like 8053248 3001105 SCOP2B (2022-06-29)
EA [auth X]SCOP2B SuperfamilyPH domain-like 8093403 3000134 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 1]Proteasomee4cr411 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
B [auth 2]Proteasomee4cr421 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
C [auth 3]Proteasomee4cr431 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
D [auth 4]Proteasomee4cr441 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
E [auth 5]Proteasomee4cr451 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
F [auth 6]Proteasomee4cr461 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
G [auth 7]Proteasomee4cr471 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
H [auth A]Proteasomee4cr4A1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
I [auth B]Proteasomee4cr4B1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
J [auth C]Proteasomee4cr4C1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
K [auth D]Proteasomee4cr4D1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
L [auth E]Proteasomee4cr4E1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
M [auth F]Proteasomee4cr4F1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
N [auth G]Proteasomee4cr4G1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
O [auth H]PRK03992e4cr4H2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK03992ECOD (1.6)
O [auth H]Sigma54_activate4cr4H1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
P [auth I]26Sp45e4cr4I2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: 26Sp45ECOD (1.6)
P [auth I]PRK03992e4cr4I1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK03992ECOD (1.6)
P [auth I]Sigma54_activate4cr4I3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
Q [auth J]26Sp45e4cr4J3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: 26Sp45ECOD (1.6)
Q [auth J]KOG0652_2nde4cr4J2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: KOG0652_2ndECOD (1.6)
Q [auth J]Sigma54_activate4cr4J1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
R [auth K]26Sp45e4cr4K4 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: 26Sp45ECOD (1.6)
R [auth K]PRK03992e4cr4K3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK03992ECOD (1.6)
R [auth K]Sigma54_activate4cr4K2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
S [auth L]26Sp45e4cr4L3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: 26Sp45ECOD (1.6)
S [auth L]PRK03992e4cr4L1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK03992ECOD (1.6)
S [auth L]Sigma54_activate4cr4L2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
T [auth M]KOG0652_1ste4cr4M2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: KOG0652_1stECOD (1.6)
T [auth M]KOG0652_2nde4cr4M3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: KOG0652_2ndECOD (1.6)
T [auth M]Sigma54_activate4cr4M1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
U [auth N]KOG2062_2nde4cr4N1 A: beta sandwichesX: 26S proteasome subunit Rpn2 C-terminal domain (From Topology)H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 C-terminal domainF: KOG2062_2ndECOD (1.6)
U [auth N]KOG2062_1ste4cr4N3 A: alpha superhelicesX: Repetitive alpha hairpinsH: 26S proteasome subunit Rpn2 N-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 N-terminal domainF: KOG2062_1stECOD (1.6)
U [auth N]HEAT_2_3e4cr4N2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Proteasome/cyclosome (PC) repeat (From Topology)T: Proteasome/cyclosome (PC) repeatF: HEAT_2_3ECOD (1.6)
V [auth O]PCIe4cr4O2 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
V [auth O]KOG2908_Ne4cr4O1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2908_NECOD (1.6)
V [auth O]KOG2908_likee4cr4O3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN9 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN9 C-terminal helixF: KOG2908_likeECOD (1.6)
W [auth P]PCIe4cr4P1 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
W [auth P]RPN7_1e4cr4P3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RPN7_1ECOD (1.6)
W [auth P]KOG1498e4cr4P2 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN5 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN5 C-terminal helixF: KOG1498ECOD (1.6)
X [auth Q]PCIe4cr4Q4 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
X [auth Q]KOG1463e4cr4Q1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG1463ECOD (1.6)
X [auth Q]RPN6_likee4cr4Q3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN6 C-termial helix (From Topology)T: 26S proteasome regulatory subunit RPN6 C-termial helixF: RPN6_likeECOD (1.6)
Y [auth R]PCI_2e4cr4R1 A: alpha arraysX: HTHH: HTHT: wingedF: PCI_2ECOD (1.6)
Y [auth R]RPN7e4cr4R2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RPN7ECOD (1.6)
Y [auth R]KOG0687e4cr4R3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN7 C-terminal helixF: KOG0687ECOD (1.6)
Z [auth S]PCIe4cr4S1 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
Z [auth S]KOG2581e4cr4S3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2581ECOD (1.6)
Z [auth S]Rpn3_Ce4cr4S2 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN3 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN3 C-terminal helixF: Rpn3_CECOD (1.6)
AA [auth T]CSN8_PSD8_EIF3K_C_2e4cr4T1 A: alpha arraysX: HTHH: HTHT: wingedF: CSN8_PSD8_EIF3K_C_2ECOD (1.6)
AA [auth T]SAC3_GANP_1ste4cr4T2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: SAC3_GANP_1stECOD (1.6)
BA [auth U]JABe4cr4U1 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JABECOD (1.6)
BA [auth U]MitMem_rege4cr4U2 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: MitMem_regECOD (1.6)
CA [auth V]JABe4cr4V1 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JABECOD (1.6)
CA [auth V]UNK_F_TYPEe4cr4V2 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: UNK_F_TYPEECOD (1.6)
DA [auth W]VWAe4cr4W1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: vWA-likeF: VWAECOD (1.6)
EA [auth X]Proteasom_Rpn13e4cr4X1 A: beta barrelsX: PH domain-likeH: PH domain-like (From Topology)T: PH domain-likeF: Proteasom_Rpn13ECOD (1.6)
GA [auth Z]KOG2005_1ste4cr4Z2 A: alpha superhelicesX: Repetitive alpha hairpinsH: 26S proteasome subunit Rpn2 N-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 N-terminal domainF: KOG2005_1stECOD (1.6)
GA [auth Z]KOG1858_2nde4cr4Z1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Proteasome/cyclosome (PC) repeat (From Topology)T: Proteasome/cyclosome (PC) repeatF: KOG1858_2ndECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 1]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
B [auth 2]PF12465Proteasome beta subunits C terminal (Pr_beta_C)Proteasome beta subunits C terminal- Family
C [auth 3]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
D [auth 4]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
F [auth 6]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
G [auth 7]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
H [auth A]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
H [auth A]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
I [auth B]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
I [auth B]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
J [auth C]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
J [auth C]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
K [auth D]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
K [auth D]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
L [auth E]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
M [auth F]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
M [auth F]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
N [auth G]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
N [auth G]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
O [auth H]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
O [auth H]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
P [auth I]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
P [auth I]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
P [auth I]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
Q [auth J]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
Q [auth J]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
Q [auth J]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
R [auth K]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
R [auth K]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
S [auth L]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
S [auth L]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
S [auth L]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
T [auth M]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
T [auth M]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
T [auth M]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
U [auth N]PF13646HEAT repeats (HEAT_2)HEAT repeats- Repeat
U [auth N]PF1800426S proteasome regulatory subunit RPN2 C-terminal domain (RPN2_C)26S proteasome regulatory subunit RPN2 C-terminal domainThis is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating inter ...Domain
U [auth N]PF2150526S proteasome subunit RPN2, N-terminal domain (RPN2_N)26S proteasome subunit RPN2, N-terminal domain- Repeat
U [auth N]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
V [auth O]PF18261Rpn9 C-terminal helix (Rpn9_C)Rpn9 C-terminal helix- Family
V [auth O]PF22037PSD13 N-terminal repeats (PSD13_N)PSD13 N-terminal repeats- Repeat
V [auth O]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
W [auth P]PF1809826S proteasome regulatory subunit RPN5 C-terminal domain (RPN5_C)26S proteasome regulatory subunit RPN5 C-terminal domainThis is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degrada ...Domain
W [auth P]PF22241PSMD12/CSN4, N-terminal (PSMD12-CSN4_N)PSMD12/CSN4, N-terminal- Repeat
W [auth P]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
X [auth Q]PF1805526S proteasome regulatory subunit RPN6 N-terminal domain (RPN6_N)26S proteasome regulatory subunit RPN6 N-terminal domain- Repeat
X [auth Q]PF1850326S proteasome subunit RPN6 C-terminal helix domain (RPN6_C_helix)26S proteasome subunit RPN6 C-terminal helix domainThis is the C-terminal helix domain found in RPN6, a component of the 26S proteasome. The C-terminal helices are essential for lid assembly [1, 2]. Domain
X [auth Q]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
Y [auth R]PF2115426S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix (RPN7_PSMD6_C)26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helixRPN7/PSDM6 are regulatory subunits from the 26S proteasome. This entry represents the C-terminal helix. Domain
Y [auth R]PF1060226S proteasome subunit RPN7 (RPN7)26S proteasome subunit RPN7- Repeat
Y [auth R]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
Z [auth S]PF08375Proteasome regulatory subunit C-terminal (Rpn3_C)Proteasome regulatory subunit C-terminal- Family
Z [auth S]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
AA [auth T]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
BA [auth U]PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family
DA [auth W]PF13519von Willebrand factor type A domain (VWA_2)von Willebrand factor type A domainDomain
EA [auth X]PF04683Proteasome complex subunit Rpn13, Pru domain (Rpn13_ADRM1_Pru)Proteasome complex subunit Rpn13, Pru domainThis family was thought originally to be involved in cell-adhesion [1,2], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of ...Domain
GA [auth Z]PF17781RPN1 N-terminal domain (RPN1_RPN2_N)RPN1 N-terminal domain- Repeat
GA [auth Z]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]PROTEASOME COMPONENT PRE3
B [auth 2]PROTEASOME COMPONENT PUP1
C [auth 3]PROTEASOME COMPONENT PUP3
D [auth 4]PROTEASOME COMPONENT C11
E [auth 5]PROTEASOME COMPONENT PRE2
F [auth 6]PROTEASOME COMPONENT C5-
G [auth 7]PROTEASOME COMPONENT PRE4-
H [auth A]PROTEASOME COMPONENT C7-ALPHA-
I [auth B]PROTEASOME COMPONENT Y7-
J [auth C]PROTEASOME COMPONENT Y13-
K [auth D]PROTEASOME COMPONENT PRE6-
L [auth E]PROTEASOME COMPONENT PUP2-
M [auth F]PROTEASOME COMPONENT PRE5-
N [auth G]PROTEASOME COMPONENT C1
O [auth H]26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG
P [auth I]26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG
Q [auth J]26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG
R [auth K]26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG
S [auth L]26S PROTEASE SUBUNIT RPT4
T [auth M]26S PROTEASE REGULATORY SUBUNIT 6A
U [auth N]26S PROTEASOME REGULATORY SUBUNIT RPN2
V [auth O]26S PROTEASOME REGULATORY SUBUNIT RPN9
W [auth P]26S PROTEASOME REGULATORY SUBUNIT RPN5-
X [auth Q]26S PROTEASOME REGULATORY SUBUNIT RPN6
Y [auth R]26S PROTEASOME REGULATORY SUBUNIT RPN7
Z [auth S]26S PROTEASOME REGULATORY SUBUNIT RPN3
AA [auth T]26S PROTEASOME REGULATORY SUBUNIT RPN12-
BA [auth U]26S PROTEASOME REGULATORY SUBUNIT RPN8
CA [auth V]26S PROTEASOME REGULATORY SUBUNIT RPN11
DA [auth W]26S PROTEASOME REGULATORY SUBUNIT RPN10
EA [auth X]26S PROTEASOME REGULATORY SUBUNIT RPN13
FA [auth Y]26S PROTEASOME COMPLEX SUBUNIT SEM1
GA [auth Z]26S PROTEASOME REGULATORY SUBUNIT RPN1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 1]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
A [auth 1]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
A [auth 1]IPR023333Proteasome B-type subunitFamily
A [auth 1]IPR001353Proteasome, subunit alpha/betaFamily
A [auth 1]IPR000243Peptidase T1A, proteasome beta-subunitFamily
B [auth 2]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
B [auth 2]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
B [auth 2]IPR024689Proteasome beta subunit, C-terminalDomain
B [auth 2]IPR023333Proteasome B-type subunitFamily
B [auth 2]IPR001353Proteasome, subunit alpha/betaFamily
B [auth 2]IPR000243Peptidase T1A, proteasome beta-subunitFamily
C [auth 3]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
C [auth 3]IPR023333Proteasome B-type subunitFamily
C [auth 3]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
C [auth 3]IPR001353Proteasome, subunit alpha/betaFamily
C [auth 3]IPR033811Proteasome beta 3 subunitFamily
D [auth 4]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
D [auth 4]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
D [auth 4]IPR023333Proteasome B-type subunitFamily
D [auth 4]IPR001353Proteasome, subunit alpha/betaFamily
D [auth 4]IPR035206Proteasome subunit beta 2Family
E [auth 5]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
E [auth 5]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
E [auth 5]IPR023333Proteasome B-type subunitFamily
E [auth 5]IPR001353Proteasome, subunit alpha/betaFamily
E [auth 5]IPR000243Peptidase T1A, proteasome beta-subunitFamily
F [auth 6]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
F [auth 6]IPR023333Proteasome B-type subunitFamily
F [auth 6]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
F [auth 6]IPR001353Proteasome, subunit alpha/betaFamily
G [auth 7]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
G [auth 7]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
G [auth 7]IPR023333Proteasome B-type subunitFamily
G [auth 7]IPR016295Proteasome subunit beta 4Family
G [auth 7]IPR001353Proteasome, subunit alpha/betaFamily
H [auth A]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
H [auth A]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
H [auth A]IPR050115Proteasome subunit alphaFamily
H [auth A]IPR023332Proteasome alpha-type subunitFamily
H [auth A]IPR001353Proteasome, subunit alpha/betaFamily
H [auth A]IPR034642Proteasome subunit alpha6Family
I [auth B]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
I [auth B]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
I [auth B]IPR050115Proteasome subunit alphaFamily
I [auth B]IPR023332Proteasome alpha-type subunitFamily
I [auth B]IPR001353Proteasome, subunit alpha/betaFamily
J [auth C]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
J [auth C]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
J [auth C]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
J [auth C]IPR050115Proteasome subunit alphaFamily
J [auth C]IPR023332Proteasome alpha-type subunitFamily
J [auth C]IPR001353Proteasome, subunit alpha/betaFamily
K [auth D]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
K [auth D]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
K [auth D]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
K [auth D]IPR050115Proteasome subunit alphaFamily
K [auth D]IPR023332Proteasome alpha-type subunitFamily
K [auth D]IPR001353Proteasome, subunit alpha/betaFamily
L [auth E]IPR033812Proteasome subunit alpha5Family
L [auth E]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
L [auth E]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
L [auth E]IPR050115Proteasome subunit alphaFamily
L [auth E]IPR023332Proteasome alpha-type subunitFamily
L [auth E]IPR001353Proteasome, subunit alpha/betaFamily
M [auth F]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
M [auth F]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
M [auth F]IPR050115Proteasome subunit alphaFamily
M [auth F]IPR023332Proteasome alpha-type subunitFamily
M [auth F]IPR001353Proteasome, subunit alpha/betaFamily
N [auth G]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
N [auth G]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
N [auth G]IPR050115Proteasome subunit alphaFamily
N [auth G]IPR023332Proteasome alpha-type subunitFamily
N [auth G]IPR001353Proteasome, subunit alpha/betaFamily
O [auth H]IPR04872326S proteasome regulatory subunit 7-like, OB domainDomain
O [auth H]IPR05022126S Proteasome Regulatory ATPaseFamily
O [auth H]IPR041569AAA ATPase, AAA+ lid domainDomain
O [auth H]IPR003960ATPase, AAA-type, conserved siteConserved Site
O [auth H]IPR003593AAA+ ATPase domainDomain
O [auth H]IPR003959ATPase, AAA-type, coreDomain
O [auth H]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth H]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
P [auth I]IPR05022126S Proteasome Regulatory ATPaseFamily
P [auth I]IPR041569AAA ATPase, AAA+ lid domainDomain
P [auth I]IPR032501Proteasomal ATPase, second OB domainDomain
P [auth I]IPR003960ATPase, AAA-type, conserved siteConserved Site
P [auth I]IPR003593AAA+ ATPase domainDomain
P [auth I]IPR003959ATPase, AAA-type, coreDomain
P [auth I]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth I]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Q [auth J]IPR05022126S Proteasome Regulatory ATPaseFamily
Q [auth J]IPR041569AAA ATPase, AAA+ lid domainDomain
Q [auth J]IPR032501Proteasomal ATPase, second OB domainDomain
Q [auth J]IPR003960ATPase, AAA-type, conserved siteConserved Site
Q [auth J]IPR003593AAA+ ATPase domainDomain
Q [auth J]IPR003959ATPase, AAA-type, coreDomain
Q [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth J]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
R [auth K]IPR05022126S Proteasome Regulatory ATPaseFamily
R [auth K]IPR032501Proteasomal ATPase, second OB domainDomain
R [auth K]IPR003960ATPase, AAA-type, conserved siteConserved Site
R [auth K]IPR003593AAA+ ATPase domainDomain
R [auth K]IPR003959ATPase, AAA-type, coreDomain
R [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
R [auth K]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
S [auth L]IPR05022126S Proteasome Regulatory ATPaseFamily
S [auth L]IPR041569AAA ATPase, AAA+ lid domainDomain
S [auth L]IPR032501Proteasomal ATPase, second OB domainDomain
S [auth L]IPR003960ATPase, AAA-type, conserved siteConserved Site
S [auth L]IPR003593AAA+ ATPase domainDomain
S [auth L]IPR003959ATPase, AAA-type, coreDomain
S [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth L]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
T [auth M]IPR05022126S Proteasome Regulatory ATPaseFamily
T [auth M]IPR041569AAA ATPase, AAA+ lid domainDomain
T [auth M]IPR032501Proteasomal ATPase, second OB domainDomain
T [auth M]IPR003960ATPase, AAA-type, conserved siteConserved Site
T [auth M]IPR003593AAA+ ATPase domainDomain
T [auth M]IPR003959ATPase, AAA-type, coreDomain
T [auth M]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth M]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
U [auth N]IPR04062326S proteasome regulatory subunit RPN2, C-terminalDomain
U [auth N]IPR016024Armadillo-type foldHomologous Superfamily
U [auth N]IPR002015Proteasome/cyclosome repeatRepeat
U [auth N]IPR011989Armadillo-like helicalHomologous Superfamily
U [auth N]IPR04857026S proteasome non-ATPase regulatory subunit 1/RPN2, N-terminal domainDomain
U [auth N]IPR01664226S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunitFamily
V [auth O]IPR054179PSD13, N-terminalDomain
V [auth O]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
V [auth O]IPR03529826S Proteasome non-ATPase regulatory subunit 13Family
V [auth O]IPR000717Proteasome component (PCI) domainDomain
V [auth O]IPR040798Rpn9, C-terminal helixDomain
W [auth P]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
W [auth P]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
W [auth P]IPR000717Proteasome component (PCI) domainDomain
W [auth P]IPR04089626S proteasome regulatory subunit RPN5, C-terminal domainDomain
W [auth P]IPR04013426S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4Family
W [auth P]IPR054559PSMD12/CSN4-like, N-terminalDomain
X [auth Q]IPR05087126S Proteasome and COP9 Signalosome ComponentsFamily
X [auth Q]IPR0407806S proteasome subunit Rpn6, C-terminal helix domainDomain
X [auth Q]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
X [auth Q]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
X [auth Q]IPR04077326S proteasome regulatory subunit Rpn6, N-terminalDomain
X [auth Q]IPR000717Proteasome component (PCI) domainDomain
Y [auth R]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
Y [auth R]IPR01958526S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1Family
Y [auth R]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
Y [auth R]IPR04954926S proteasome regulatory subunit RPN7/PSMD6, C-terminal helixDomain
Y [auth R]IPR000717Proteasome component (PCI) domainDomain
Y [auth R]IPR04513526S proteasome regulatory subunit Rpn7, N-terminalDomain
Y [auth R]IPR019734Tetratricopeptide repeatRepeat
Z [auth S]IPR000717Proteasome component (PCI) domainDomain
Z [auth S]IPR01358626S proteasome regulatory subunit, C-terminalDomain
Z [auth S]IPR050756COP9 signalosome complex subunit 3Family
Z [auth S]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
AA [auth T]IPR000717Proteasome component (PCI) domainDomain
AA [auth T]IPR00674626S proteasome non-ATPase regulatory subunit Rpn12Family
AA [auth T]IPR033464CSN8/PSMD8/EIF3KDomain
BA [auth U]IPR024969EIF3F/CSN6-like, C-terminalDomain
BA [auth U]IPR037518MPN domainDomain
BA [auth U]IPR03385826S Proteasome non-ATPase regulatory subunit 7/8Family
BA [auth U]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
CA [auth V]IPR050242JAMM/MPN+ metalloenzymes, peptidase M67AFamily
CA [auth V]IPR037518MPN domainDomain
CA [auth V]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
DA [auth W]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
DA [auth W]IPR02704026S proteasome non-ATPase regulatory subunit 4Family
DA [auth W]IPR002035von Willebrand factor, type ADomain
DA [auth W]IPR003903Ubiquitin interacting motifConserved Site
EA [auth X]IPR044868Rpn13/ADRM1, Pru domainDomain
EA [auth X]IPR006773Proteasomal ubiquitin receptor Rpn13/ADRM1Family
EA [auth X]IPR038633Proteasomal ubiquitin receptor Rpn13/ADRM1, Pru domain superfamilyHomologous Superfamily
FA [auth Y]IPR007834DSS1/SEM1Family
GA [auth Z]IPR04143326S proteasome non-ATPase regulatory subunit RPN1, C-terminalDomain
GA [auth Z]IPR016024Armadillo-type foldHomologous Superfamily
GA [auth Z]IPR002015Proteasome/cyclosome repeatRepeat
GA [auth Z]IPR01664326S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunitFamily
GA [auth Z]IPR011989Armadillo-like helicalHomologous Superfamily
GA [auth Z]IPR040892RPN1, N-terminalDomain