4DHI
Structure of C. elegans OTUB1 bound to human UBC13
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d4dhib_ | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | automated matches | automated matches | nematode (Caenorhabditis elegans ) [TaxId: 6239 ], | SCOPe (2.08) |
B [auth D] | d4dhid_ | Alpha and beta proteins (a+b) | UBC-like | UBC-like | UBC-related | Ubiquitin conjugating enzyme, UBC | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Cysteine proteinases | 8088202 | 3001808 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | OTU | e4dhiB1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: OTU | ECOD (1.6) |
B [auth D] | UQ_con | e4dhiD1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.30.200.60 | Alpha Beta | 2-Layer Sandwich | Phosphorylase Kinase | domain 1 | CATH (4.3.0) |
A [auth B] | 1.20.1300.20 | Mainly Alpha | Up-down Bundle | 3 helical TM bundles of succinate and fumarate reductases | Peptidase C65 Otubain, subdomain 2 | CATH (4.3.0) |
B [auth D] | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth D] | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR016615 | Ubiquitin thioesterase Otubain | Family |
A [auth B] | IPR042467 | Peptidase C65, otubain, subdomain 2 | Homologous Superfamily |
A [auth B] | IPR003323 | OTU domain | Domain |
A [auth B] | IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily |
A [auth B] | IPR019400 | Peptidase C65, otubain | Family |
A [auth B] | IPR042468 | Peptidase C65, otubain, subdomain 1 | Homologous Superfamily |
B [auth D] | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily |
B [auth D] | IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site |
B [auth D] | IPR000608 | Ubiquitin-conjugating enzyme E2, catalytic core domain | Domain |