5GWJ
Structure of a Human topoisomerase IIbeta fragment in complex with DNA and E7873S
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DNA_topoisoIV_1st | e5gwjA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: DNA_topoisoIV_1st | ECOD (1.6) |
A | DNA_topoisoIV_3rd | e5gwjA4 | A: alpha bundles | X: alpha-helical domain in type II DNA topoisomerase (From Topology) | H: alpha-helical domain in type II DNA topoisomerase (From Topology) | T: alpha-helical domain in type II DNA topoisomerase | F: DNA_topoisoIV_3rd | ECOD (1.6) |
A | DNA_topoisoIV_2nd_1 | e5gwjA3 | A: a+b two layers | X: a+b domain in type II DNA topoisomerase (From Topology) | H: a+b domain in type II DNA topoisomerase (From Topology) | T: a+b domain in type II DNA topoisomerase | F: DNA_topoisoIV_2nd_1 | ECOD (1.6) |
A | DNA_gyraseB_C | e5gwjA1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: DNA_gyraseB_C | ECOD (1.6) |
B | DNA_topoisoIV_1st | e5gwjB4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: DNA_topoisoIV_1st | ECOD (1.6) |
B | DNA_topoisoIV_3rd | e5gwjB1 | A: alpha bundles | X: alpha-helical domain in type II DNA topoisomerase (From Topology) | H: alpha-helical domain in type II DNA topoisomerase (From Topology) | T: alpha-helical domain in type II DNA topoisomerase | F: DNA_topoisoIV_3rd | ECOD (1.6) |
B | DNA_topoisoIV_2nd_1 | e5gwjB2 | A: a+b two layers | X: a+b domain in type II DNA topoisomerase (From Topology) | H: a+b domain in type II DNA topoisomerase (From Topology) | T: a+b domain in type II DNA topoisomerase | F: DNA_topoisoIV_2nd_1 | ECOD (1.6) |
B | DNA_gyraseB_C | e5gwjB3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: DNA_gyraseB_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.670 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
A | 3.90.199.10 | Alpha Beta | Alpha-Beta Complex | Topoisomerase II | domain 5 | CATH (4.3.0) |
A | 3.30.1360.40 | Alpha Beta | 2-Layer Sandwich | Gyrase A | domain 2 | CATH (4.3.0) |
A | 1.10.268.10 | Mainly Alpha | Orthogonal Bundle | Topoisomerase | domain 3 | CATH (4.3.0) |
B | 3.40.50.670 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
B | 3.90.199.10 | Alpha Beta | Alpha-Beta Complex | Topoisomerase II | domain 5 | CATH (4.3.0) |
B | 3.30.1360.40 | Alpha Beta | 2-Layer Sandwich | Gyrase A | domain 2 | CATH (4.3.0) |
B | 1.10.268.10 | Mainly Alpha | Orthogonal Bundle | Topoisomerase | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01751 | Toprim domain (Toprim) | Toprim domain | - | Family | |
PF16898 | C-terminal associated domain of TOPRIM (TOPRIM_C) | C-terminal associated domain of TOPRIM | - | Family | |
PF00521 | DNA gyrase/topoisomerase IV, subunit A (DNA_topoisoIV) | DNA gyrase/topoisomerase IV, subunit A | - | Family | |