Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8038274 3000770 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8038275 3000806 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8038258 3001831 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8038259 3001831 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8037844 3000779 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8038260 3001831 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8038263 3001831 SCOP2B (2022-06-29)
CSCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8038264 3000966 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTransmembrane di-heme cytochromes 8038265 3000517 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 8038268 3000762 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c 8038266 3000815 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyISP transmembrane anchor 8038269 3000753 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyISP domain 8038267 3000233 SCOP2B (2022-06-29)
FSCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8038272 3000797 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
GUcrQe6hawG1 A: extended segmentsX: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: UcrQECOD (1.6)
HUCR_hingee6hawH1 A: alpha bundlesX: cytochrome bc1 complex 11 kDa protein-likeH: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: UCR_hingeECOD (1.6)
APeptidase_M16_Ce6hawA2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: Peptidase_M16_CECOD (1.6)
APeptidase_M16e6hawA1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: Peptidase_M16ECOD (1.6)
JUCR_UQCRX_QCR9e6hawJ1 A: extended segmentsX: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: UCR_UQCRX_QCR9ECOD (1.6)
BPeptidase_M16_Ce6hawB2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: Peptidase_M16_CECOD (1.6)
BPeptidase_M16e6hawB1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: Peptidase_M16ECOD (1.6)
CCytochrom_B_Ce6hawC1 A: alpha bundlesX: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: Cytochrom_B_CECOD (1.6)
CCytochrome_Be6hawC2 A: alpha bundlesX: Transmembrane heme-binding four-helical bundle (From Homology)H: Transmembrane heme-binding four-helical bundleT: Transmembrane di-heme cytochromesF: Cytochrome_BECOD (1.6)
DCytochrom_C1_Ne6hawD2 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C1_NECOD (1.6)
DCytochrom_C1_Ce6hawD1 A: extended segmentsX: cytochrome c1 transmembrane anchor (From Topology)H: cytochrome c1 transmembrane anchor (From Topology)T: cytochrome c1 transmembrane anchorF: Cytochrom_C1_CECOD (1.6)
ERieske_cytochrome_bc1,Rieske_6e6hawE2 A: beta sandwichesX: ISP domain (From Topology)H: ISP domain (From Topology)T: ISP domainF: Rieske_cytochrome_bc1,Rieske_6ECOD (1.6)
EUCR_TMe6hawE1 A: extended segmentsX: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)T: iron-sulfur subunit (ISP) transmembrane anchorF: UCR_TMECOD (1.6)
FUCR_14kDe6hawF1 A: alpha arraysX: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: UCR_14kDECOD (1.6)
IUbiq-Cytc-red_Ne6hawI1 A: extended segmentsX: Ubiquinol-cytochrome c reductase 8 kDa protein (From Topology)H: Ubiquinol-cytochrome c reductase 8 kDa protein (From Topology)T: Ubiquinol-cytochrome c reductase 8 kDa proteinF: Ubiq-Cytc-red_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
G1.20.5.210 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 8CATH (4.3.0)
H1.10.287.20 Mainly Alpha Orthogonal Bundle Helix Hairpins Ubiquinol-cytochrome C reductase hinge domainCATH (4.3.0)
A3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
J1.20.5.260 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 9CATH (4.3.0)
B3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
C1.20.810.10 Mainly Alpha Up-down Bundle Cytochrome Bc1 Complex Chain CCATH (4.3.0)
D1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
D1.20.5.100 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome c1, transmembrane anchor, C-terminalCATH (4.3.0)
E1.20.5.270 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Ubiquinol cytochrome reductase, transmembrane domainCATH (4.3.0)
E2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
F1.10.1090.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain FCATH (4.3.0)
I2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex Chain ICATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02939UcrQ family (UcrQ)UcrQ family- Family
PF02320Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge)Ubiquinol-cytochrome C reductase hinge protein- Family
PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1].Domain
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
PF05365Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like (UCR_UQCRX_QCR9)Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like- Family
PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1].Domain
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petD- Domain
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petB- Domain
PF02167Cytochrome C1 family (Cytochrom_C1)Cytochrome C1 family- Family
PF02921Ubiquinol cytochrome reductase transmembrane region (UCR_TM)Ubiquinol cytochrome reductase transmembrane region- Family
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
PF02271Ubiquinol-cytochrome C reductase complex 14kD subunit (UCR_14kD)Ubiquinol-cytochrome C reductase complex 14kD subunit- Family
PF09165Ubiquinol-cytochrome c reductase 8 kDa, N-terminal (Ubiq-Cytc-red_N)Ubiquinol-cytochrome c reductase 8 kDa, N-terminalMembers of this family adopt a structure consisting of many antiparallel beta sheets, with few alpha helices, in a non-globular arrangement. They are required for proper functioning of the respiratory chain [1].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Cytochrome b-c1 complex subunit 8- -
Cytochrome b-c1 complex subunit 6, mitochondrial- -
Cytochrome b-c1 complex subunit 1, mitochondrial -
Cytochrome b-c1 complex subunit 9- -
Cytochrome b-c1 complex subunit 2, mitochondrial
Cytochrome b
Cytochrome c1, heme protein, mitochondrial
Cytochrome b-c1 complex subunit Rieske, mitochondrial
Cytochrome b-c1 complex subunit 7- -
Cytochrome b-c1 complex subunit Rieske, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR004205Cytochrome b-c1 complex subunit 8Family
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyHomologous Superfamily
IPR003422Cytochrome b-c1 complex, subunit 6Family
IPR023184Ubiquinol-cytochrome C reductase hinge domainDomain
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyHomologous Superfamily
IPR007863Peptidase M16, C-terminalDomain
IPR011765Peptidase M16, N-terminalDomain
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
IPR008027Cytochrome b-c1 complex subunit 9Family
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyHomologous Superfamily
IPR007863Peptidase M16, C-terminalDomain
IPR011765Peptidase M16, N-terminalDomain
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
IPR001431Peptidase M16, zinc-binding siteBinding Site
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
IPR005798Cytochrome b/b6, C-terminalDomain
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
IPR030689Cytochrome bFamily
IPR005797Cytochrome b/b6, N-terminal domainDomain
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
IPR002326Cytochrome c1Family
IPR009056Cytochrome c-like domainDomain
IPR021157Cytochrome c1, transmembrane anchor, C-terminalHomologous Superfamily
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
IPR014349Rieske iron-sulphur proteinFamily
IPR011070Globular protein, non-globular alpha/beta subunitHomologous Superfamily
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
IPR015248Ubiquinol-cytochrome c reductase iron-sulphur subunit, N-terminalDomain
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
IPR005805Rieske iron-sulphur protein, C-terminalDomain
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
IPR003197Cytochrome b-c1 complex subunit 7Family
IPR036544Cytochrome b-c1 complex subunit 7 superfamilyHomologous Superfamily
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
IPR014349Rieske iron-sulphur proteinFamily
IPR011070Globular protein, non-globular alpha/beta subunitHomologous Superfamily
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
IPR015248Ubiquinol-cytochrome c reductase iron-sulphur subunit, N-terminalDomain
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
IPR005805Rieske iron-sulphur protein, C-terminalDomain
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
MemProtMDAnnotated as membrane protein by MemProtMD