Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyG protein-coupled receptor-like 8071332 3000473 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyG protein-coupled receptor-like 8071332 3000473 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyG protein-coupled receptor-like 8071332 3000473 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyG protein-coupled receptor-like 8071332 3000473 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyG protein-coupled receptor-like 8071332 3000473 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ABac_rhodopsine6xytA1 A: alpha bundlesX: Family A G protein-coupled receptor-like (From Topology)H: Family A G protein-coupled receptor-like (From Topology)T: Family A G protein-coupled receptor-likeF: Bac_rhodopsinECOD (1.6)
CBac_rhodopsine6xytC1 A: alpha bundlesX: Family A G protein-coupled receptor-like (From Topology)H: Family A G protein-coupled receptor-like (From Topology)T: Family A G protein-coupled receptor-likeF: Bac_rhodopsinECOD (1.6)
BBac_rhodopsine6xytB1 A: alpha bundlesX: Family A G protein-coupled receptor-like (From Topology)H: Family A G protein-coupled receptor-like (From Topology)T: Family A G protein-coupled receptor-likeF: Bac_rhodopsinECOD (1.6)
DBac_rhodopsine6xytD1 A: alpha bundlesX: Family A G protein-coupled receptor-like (From Topology)H: Family A G protein-coupled receptor-like (From Topology)T: Family A G protein-coupled receptor-likeF: Bac_rhodopsinECOD (1.6)
EBac_rhodopsine6xytE1 A: alpha bundlesX: Family A G protein-coupled receptor-like (From Topology)H: Family A G protein-coupled receptor-like (From Topology)T: Family A G protein-coupled receptor-likeF: Bac_rhodopsinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E1.20.1070.10 Mainly Alpha Up-down Bundle Rhopdopsin 7-helix transmembrane proteins Rhodopsin 7-helix transmembrane proteinsCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01036Bacteriorhodopsin-like protein (Bac_rhodopsin)Bacteriorhodopsin-like proteinThe bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [2,3]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, th ...The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [2,3]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). This family also includes distantly related proteins that do not contain the retinal binding lysine and so cannot function as opsins. Some fungal examples are: Swiss:O74870, Swiss:P25619, Swiss:P38079, Swiss:Q12117.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Sodium pumping rhodopsin- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR001425Archaeal/bacterial/fungal rhodopsinsFamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B, C, D, E
LYR Parent Component: LYS

RESIDAA0120

PSI-MOD :  N6-retinylidene-L-lysine MOD:00129