1KX2

Minimized average structure of a mono-heme ferrocytochrome c from Shewanella putrefaciens


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY1.5 mM Cytochrome c: 100 mM phosphate buffer; reduced with dithyonite90% H2O/10% D2O7.0ambient298
23D_15N-separated_TOCSY1.5 mM Cytochrome c: 100 mM phosphate buffer; reduced with dithyonite90% H2O/10% D2O7.0ambient298
32D_NOESY1.5 mM Cytochrome c: 100 mM phosphate buffer; reduced with dithyonite90% H2O/10% D2O7.0ambient298
42D_TOCSY1.5 mM Cytochrome c: 100 mM phosphate buffer; reduced with dithyonite90% H2O/10% D2O7.0ambient298
5HNHA1.5 mM Cytochrome c: 100 mM phosphate buffer; reduced with dithyonite90% H2O/10% D2O7.0ambient298
6HNHB1.5 mM Cytochrome c: 100 mM phosphate buffer; reduced with dithyonite90% H2O/10% D2O7.0ambient298
715N-HSQC1.5 mM Cytochrome c: 100 mM phosphate buffer; reduced with dithyonite90% H2O/10% D2O7.0ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE700
3BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealing in the dihedral angle space in DYANA in 15000 steps; 30 structures with the lowest target function out of a total number of 250 generated structures constitute the REM family - subject to restrained energy minimization in AMBER; the minimized mean is reportedDYANA
NMR Ensemble Information
Conformer Selection Criteria
Conformers Calculated Total Number
Conformers Submitted Total Number1
Representative Model (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionDYANA1.5Guntert, P., Mumenthaler, C., Wuthrich, K.
2refinementAmber6Case