X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.12981.5M ammonium sulfate, 0.35 M ammonium phosphate, pH 7.1, VAPOR DIFFUSION, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.6252.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.4α = 90
b = 63.2β = 110.9
c = 54.6γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298AREA DETECTORUCSD MARK II1997-09-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.63092.30.047425961

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.653.45242596420093.510.179960.179920.179920.195random22.954
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.370.9-0.080.36
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg17.486
r_scangle_it3.863
r_dihedral_angle_1_deg3.096
r_scbond_it2.341
r_mcangle_it1.538
r_angle_refined_deg1.168
r_mcbond_it0.758
r_angle_other_deg0.69
r_symmetry_hbond_other0.346
r_symmetry_hbond_refined0.287
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg17.486
r_scangle_it3.863
r_dihedral_angle_1_deg3.096
r_scbond_it2.341
r_mcangle_it1.538
r_angle_refined_deg1.168
r_mcbond_it0.758
r_angle_other_deg0.69
r_symmetry_hbond_other0.346
r_symmetry_hbond_refined0.287
r_symmetry_vdw_refined0.277
r_nbd_refined0.227
r_symmetry_vdw_other0.202
r_nbd_other0.184
r_xyhbond_nbd_refined0.155
r_chiral_restr0.071
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2203
Nucleic Acid Atoms
Solvent Atoms90
Heterogen Atoms86

Software

Software
Software NamePurpose
REFMACrefinement
SDMSdata reduction
CNSrefinement
SDMSdata collection
SDMSdata scaling
CNSphasing