X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.4295ammonium sulfate, disodium phosphate, monosodium phosphate, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.346

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.206α = 90
b = 64.309β = 90
c = 77.666γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2003-10-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7A0.812EMBL/DESY, HAMBURGBW7A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1133.399.60.04734.56.510351410
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.0197.70.16510.24.54121

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1rgg13398348516699.560.146310.145240.16593RANDOM8.056
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.13-0.330.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.078
r_sphericity_free5.766
r_sphericity_bonded4.166
r_scangle_it2.912
r_scbond_it2.068
r_mcangle_it1.804
r_angle_refined_deg1.478
r_mcbond_it1.179
r_rigid_bond_restr0.932
r_angle_other_deg0.874
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.078
r_sphericity_free5.766
r_sphericity_bonded4.166
r_scangle_it2.912
r_scbond_it2.068
r_mcangle_it1.804
r_angle_refined_deg1.478
r_mcbond_it1.179
r_rigid_bond_restr0.932
r_angle_other_deg0.874
r_symmetry_vdw_other0.307
r_nbd_other0.263
r_nbd_refined0.233
r_xyhbond_nbd_refined0.17
r_symmetry_vdw_refined0.147
r_symmetry_hbond_refined0.145
r_chiral_restr0.091
r_nbtor_other0.083
r_gen_planes_other0.011
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_bond_other_d0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1686
Nucleic Acid Atoms
Solvent Atoms589
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing