X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherselenomethionine labeled protein

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.229350mM ammonium sulfate, 100mM sodium acetate buffer, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.4965

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 148.8α = 90
b = 81.41β = 123.42
c = 89.5γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU JUPITER 2102003-02-28MSINGLE WAVELENGTH
21x-rayMMAD
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL45XU1.00SPring-8BL45XU
2SYNCHROTRONSPRING-8 BEAMLINE BL45XU0.9791, 0.9793, 0.982SPring-8BL45XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.22094.142707
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.22.2891.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUTselenomethionine labeled protein2.219.844270740566214194.230.2110.2110.2090.248RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it7.42
r_dihedral_angle_1_deg6.277
r_scbond_it4.59
r_mcangle_it2.713
r_angle_refined_deg2.556
r_mcbond_it1.542
r_angle_other_deg1.178
r_symmetry_vdw_other0.316
r_symmetry_vdw_refined0.278
r_nbd_other0.253
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it7.42
r_dihedral_angle_1_deg6.277
r_scbond_it4.59
r_mcangle_it2.713
r_angle_refined_deg2.556
r_mcbond_it1.542
r_angle_other_deg1.178
r_symmetry_vdw_other0.316
r_symmetry_vdw_refined0.278
r_nbd_other0.253
r_nbd_refined0.248
r_chiral_restr0.189
r_xyhbond_nbd_refined0.188
r_symmetry_hbond_refined0.174
r_nbtor_other0.102
r_bond_refined_d0.041
r_gen_planes_refined0.012
r_gen_planes_other0.004
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4175
Nucleic Acid Atoms
Solvent Atoms103
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
AMoREphasing