X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION6.530020% PEG3350, 0.2M Ammonium Tartrate, VAPOR DIFFUSION, temperature 300K, pH 6.5
Crystal Properties
Matthews coefficientSolvent content
2.2946.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 98.938α = 90
b = 74.195β = 105.52
c = 85.832γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVVeriMAX HF2005-03-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.248299.10.870.879.23.828728-334.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.242.2897.60.60.62.553.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.2482.762893327265146298.870.189770.185870.26239RANDOM37.437
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.68-0.86-0.13-2.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.268
r_dihedral_angle_4_deg18.603
r_dihedral_angle_3_deg17.792
r_dihedral_angle_1_deg7.168
r_scangle_it4.601
r_scbond_it3.311
r_mcangle_it2.204
r_angle_refined_deg2.05
r_mcbond_it1.372
r_nbtor_refined0.317
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.268
r_dihedral_angle_4_deg18.603
r_dihedral_angle_3_deg17.792
r_dihedral_angle_1_deg7.168
r_scangle_it4.601
r_scbond_it3.311
r_mcangle_it2.204
r_angle_refined_deg2.05
r_mcbond_it1.372
r_nbtor_refined0.317
r_nbd_refined0.237
r_symmetry_vdw_refined0.226
r_symmetry_hbond_refined0.199
r_xyhbond_nbd_refined0.198
r_chiral_restr0.145
r_bond_refined_d0.025
r_gen_planes_refined0.01
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4098
Nucleic Acid Atoms
Solvent Atoms222
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
CrystalCleardata reduction
d*TREKdata scaling
PHASERphasing