Solution NMR Structure of Protein RPA1041 from Pseudomonas aeruginosa. Northeast Structural Genomics Consortium Target PaT90.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N,13C-separated NOESY | 10 mM MOPS, 450 mM NaCl, ~10 uM ZnSO4, 10 mM DTT, 0.01% NaN3, 1mM benzamidine, 1x inhibitor cocktail, 90% H2O / 10% D2O | 90% H2O/10% D2O | 450 mM | 6.5 | 1 atm | 298 | |
2 | (4,3)D_GFT_HNNCABCA | 10 mM MOPS, 450 mM NaCl, ~10 uM ZnSO4, 10 mM DTT, 0.01% NaN3, 1mM benzamidine, 1x inhibitor cocktail, 90% H2O / 10% D2O | 90% H2O/10% D2O | 450 mM | 6.5 | 1 atm | 298 | |
3 | (4,3)D_GFT_CABCA(CO)NHN | 10 mM MOPS, 450 mM NaCl, ~10 uM ZnSO4, 10 mM DTT, 0.01% NaN3, 1mM benzamidine, 1x inhibitor cocktail, 90% H2O / 10% D2O | 90% H2O/10% D2O | 450 mM | 6.5 | 1 atm | 298 | |
4 | 3D_HAB(CO)NH | 10 mM MOPS, 450 mM NaCl, ~10 uM ZnSO4, 10 mM DTT, 0.01% NaN3, 1mM benzamidine, 1x inhibitor cocktail, 90% H2O / 10% D2O | 90% H2O/10% D2O | 450 mM | 6.5 | 1 atm | 298 | |
5 | (4,3)D_GFT_HCCH-COSYali | 10 mM MOPS, 450 mM NaCl, ~10 uM ZnSO4, 10 mM DTT, 0.01% NaN3, 1mM benzamidine, 1x inhibitor cocktail, 90% H2O / 10% D2O | 90% H2O/10% D2O | 450 mM | 6.5 | 1 atm | 298 | |
6 | 3D_HCCH-TOCSYali | 10 mM MOPS, 450 mM NaCl, ~10 uM ZnSO4, 10 mM DTT, 0.01% NaN3, 1mM benzamidine, 1x inhibitor cocktail, 90% H2O / 10% D2O | 90% H2O/10% D2O | 450 mM | 6.5 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 750 |
NMR Refinement | ||
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Method | Details | Software |
Refinement in explicit water bath | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1C | Varian, Inc. |
2 | data analysis | XEASY | 1.3.13 | Bartels, Ch. |
3 | data analysis | CARA | 1.5.3 | Keller, R. |
4 | structure solution | CYANA | 2.1 | Guentert, P. |
5 | refinement | CNS | 1.1 | BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN |
6 | structure solution | AutoStructure | 2.0.0 | Huang, Y. J. |
7 | processing | PROSA | 6.0 | Guentert, P. |