2RBS

(r)(+)-3-chloro-1-phenyl-1-propanol in complex with T4 lysozyme L99A/M102Q


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1LGU 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.12772.2M sodium-potassium phosphate, 0.05M beta-mercaptoethanol, 0.05M 2-hydroxyethyldisulfide, pH 7.1, vapor diffusion, hanging drop, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.7755.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.368α = 90
b = 60.368β = 90
c = 96.895γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDADSC QUANTUM 315KOHZU: Double Crystal Si(111)2007-05-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.115872ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5552.2799.90.10611.56.32976929769
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.551.611000.3615.92923

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1LGU1.55752.272967629676150499.280.1840.1840.1830.205RANDOM15.333
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.32-0.16-0.320.48
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.644
r_dihedral_angle_4_deg11.412
r_dihedral_angle_3_deg11.086
r_dihedral_angle_1_deg4.897
r_sphericity_free3.144
r_scangle_it2.612
r_sphericity_bonded1.947
r_scbond_it1.918
r_mcangle_it1.17
r_angle_refined_deg1.127
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.644
r_dihedral_angle_4_deg11.412
r_dihedral_angle_3_deg11.086
r_dihedral_angle_1_deg4.897
r_sphericity_free3.144
r_scangle_it2.612
r_sphericity_bonded1.947
r_scbond_it1.918
r_mcangle_it1.17
r_angle_refined_deg1.127
r_rigid_bond_restr1.11
r_mcbond_it0.766
r_nbtor_refined0.304
r_nbd_refined0.189
r_symmetry_vdw_refined0.176
r_xyhbond_nbd_refined0.131
r_symmetry_hbond_refined0.124
r_chiral_restr0.078
r_bond_refined_d0.008
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1317
Nucleic Acid Atoms
Solvent Atoms285
Heterogen Atoms32

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
REFMACphasing