2RBT

n-methylbenzylamine in complex with Cytochrome C Peroxidase W191G

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1AC4

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		6	291	MES, MPD, pH 6.0, vapor diffusion, hanging drop, temperature 291K, pH 6.00

Crystal Properties
Matthews coefficient	Solvent content
3.13	60.68

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 50.989	α = 90
b = 75.752	β = 90
c = 107.08	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	110	CCD	ADSC QUANTUM 315	VERTICAL FOCUSING MIRROR SINGLE CRYSTAL SI(311)BENT MONOCHROMATOR (HORIZONTAL FOCUSING)	2006-12-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL9-1		SSRL	BL9-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.24	50	93.1	0.061	11.5	3.4		109612

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.24	1.28	60.4		0.407		2.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION		THROUGHOUT	1AC4	1.24	30	109533	109533	5452	93.1	0.123	0.122	0.146	RANDOM	12.31

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.24			0.06		-0.3

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.025
r_dihedral_angle_4_deg	23.909
r_dihedral_angle_3_deg	12.035
r_sphericity_free	7.862
r_dihedral_angle_1_deg	5.775
r_sphericity_bonded	4.678
r_scangle_it	3.276
r_scbond_it	2.611
r_mcangle_it	1.92
r_angle_refined_deg	1.594
r_mcbond_it	1.564
r_rigid_bond_restr	1.312
r_angle_other_deg	0.977
r_mcbond_other	0.787
r_symmetry_hbond_refined	0.31
r_symmetry_vdw_other	0.242
r_nbd_refined	0.24
r_nbd_other	0.195
r_nbtor_refined	0.194
r_chiral_restr	0.182
r_xyhbond_nbd_refined	0.152
r_nbtor_other	0.09
r_symmetry_vdw_refined	0.089
r_metal_ion_refined	0.02
r_bond_refined_d	0.014
r_gen_planes_refined	0.008
r_bond_other_d	0.002
r_gen_planes_other	0.002
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2344
Nucleic Acid Atoms
Solvent Atoms	503
Heterogen Atoms	73

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
REFMAC	phasing