3MGB

Teg 12 Ternary Structure Complexed with PAP and the Teicoplanin Aglycone


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2OV8 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
19.1PROTEIN CONCENTRATION OF 10MG/ML. 1:1 UL PROTEIN TO CRYSTALLIZATION SOLUTION. 25 MM CHES, PH 9.1, 1 MM TEICOPLANIN AGLYCONE, 2 MM PAP, 0.2 M AMMONIUM ACETATE, 20% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
Crystal Properties
Matthews coefficientSolvent content
2.0740.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.001α = 90
b = 78.344β = 90
c = 99.741γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152009-08-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-EAPS24-ID-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0395097.70.0840.08416.434.637695
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.1296.60.0550.0552.624.6

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENT2OV82.0432.950.1736948185193.10.1740.1710.22535.7
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.1818-1.7576-2.4242
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d20.188
f_angle_d1.183
f_chiral_restr0.08
f_plane_restr0.016
f_bond_d0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4417
Nucleic Acid Atoms
Solvent Atoms340
Heterogen Atoms63

Software

Software
Software NamePurpose
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling