X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherbuilt model into SAD map from other data

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP9293200 mM Li-sulfate, 100 mM Tris/HCl, 19-27% PEG800, 70 mM HEGA-8, anaerobically, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.8757.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.22α = 90
b = 63.12β = 90
c = 143.96γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2010-08-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.9792SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.247.4699.20.094-3-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.399.10.42

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUTbuilt model into SAD map from other data2.247.462439324393129599.40.210750.210750.208790.24815RANDOM18.184
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.16-0.470.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.921
r_dihedral_angle_3_deg11.947
r_dihedral_angle_4_deg11.741
r_dihedral_angle_1_deg4.729
r_angle_refined_deg0.827
r_scangle_it0.807
r_angle_other_deg0.712
r_scbond_it0.458
r_mcangle_it0.4
r_mcbond_it0.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.921
r_dihedral_angle_3_deg11.947
r_dihedral_angle_4_deg11.741
r_dihedral_angle_1_deg4.729
r_angle_refined_deg0.827
r_scangle_it0.807
r_angle_other_deg0.712
r_scbond_it0.458
r_mcangle_it0.4
r_mcbond_it0.21
r_chiral_restr0.046
r_mcbond_other0.02
r_bond_refined_d0.005
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2802
Nucleic Acid Atoms
Solvent Atoms174
Heterogen Atoms74

Software

Software
Software NamePurpose
HEIDIdata collection
SHARPphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling