5UXI

Protein 4 with aldehyde deformylating oxygenase activity from Nostoc puntiforme


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52981.8M ammonium sulfate, 180 mM NaCl, 90 mM cacodylate
Crystal Properties
Matthews coefficientSolvent content
2.346.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.655α = 90
b = 79.655β = 90
c = 133.055γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCD2011-06-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.97SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1229.9698.672.320.217521

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT229.961658754197.710.206450.204530.26802RANDOM35.309
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.050.020.05-0.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.358
r_dihedral_angle_4_deg27.017
r_dihedral_angle_3_deg14.568
r_long_range_B_refined7.255
r_long_range_B_other7.24
r_scangle_other5.813
r_dihedral_angle_1_deg5.337
r_scbond_it3.815
r_scbond_other3.813
r_mcangle_it3.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.358
r_dihedral_angle_4_deg27.017
r_dihedral_angle_3_deg14.568
r_long_range_B_refined7.255
r_long_range_B_other7.24
r_scangle_other5.813
r_dihedral_angle_1_deg5.337
r_scbond_it3.815
r_scbond_other3.813
r_mcangle_it3.307
r_mcangle_other3.307
r_mcbond_it2.529
r_mcbond_other2.509
r_angle_refined_deg1.68
r_angle_other_deg0.876
r_chiral_restr0.096
r_bond_refined_d0.015
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1758
Nucleic Acid Atoms
Solvent Atoms118
Heterogen Atoms42

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing