X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5UQO 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52980.1 M Tris pH 7.5 25% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.3447.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.021α = 90
b = 128.86β = 90
c = 258.462γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300-HS2017-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.054099.80.0650.0650.0910.03929.25.6171718-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Rrim I (All)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.091000.6910.6910.7830.3232.35.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5UQO2.0540162833868799.680.182770.181240.21159RANDOM48.877
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.25-0.820.57
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.753
r_dihedral_angle_4_deg18.126
r_dihedral_angle_3_deg13.688
r_long_range_B_refined6.322
r_long_range_B_other6.322
r_dihedral_angle_1_deg5.333
r_scangle_other3.908
r_angle_other_deg3.632
r_mcangle_it2.971
r_mcangle_other2.971
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.753
r_dihedral_angle_4_deg18.126
r_dihedral_angle_3_deg13.688
r_long_range_B_refined6.322
r_long_range_B_other6.322
r_dihedral_angle_1_deg5.333
r_scangle_other3.908
r_angle_other_deg3.632
r_mcangle_it2.971
r_mcangle_other2.971
r_scbond_it2.487
r_scbond_other2.487
r_mcbond_it1.958
r_mcbond_other1.958
r_angle_refined_deg1.642
r_chiral_restr0.116
r_bond_refined_d0.016
r_gen_planes_other0.014
r_gen_planes_refined0.009
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms20263
Nucleic Acid Atoms
Solvent Atoms1059
Heterogen Atoms8

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing
HKL-3000phasing