X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2WDQ2WDQ and 1X6I
experimental modelPDB 1X6I2WDQ and 1X6I

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52730.1 M HEPES pH 7.5, 0.2 M MgCl2.6H20, 30% (w/v) PEG 3350 and 40 mM NaF
Crystal Properties
Matthews coefficientSolvent content
2.0138.77

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.98α = 90
b = 100.03β = 90
c = 232.13γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2015-11-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX20.9537Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1550938.64.563285
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.152.23

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2WDQ and 1X6I2.1548.8947878256173.950.20190.19890.2582RANDOM25.594
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
10.03-1.37-8.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.642
r_dihedral_angle_4_deg17.785
r_dihedral_angle_3_deg14.251
r_dihedral_angle_1_deg6.477
r_angle_refined_deg1.392
r_angle_other_deg0.975
r_chiral_restr0.081
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d0.002
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.642
r_dihedral_angle_4_deg17.785
r_dihedral_angle_3_deg14.251
r_dihedral_angle_1_deg6.477
r_angle_refined_deg1.392
r_angle_other_deg0.975
r_chiral_restr0.081
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9652
Nucleic Acid Atoms
Solvent Atoms357
Heterogen Atoms108

Software

Software
Software NamePurpose
Blu-Icedata collection
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
SCALEPACKdata scaling
HKL-2000data reduction