7SUA

Crystal Structure of the Hypothetical Protein (ACX60_00475) from Acinetobacter baumannii


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5292Protein: 8.8 mg/ml, 0.01M Tris HCl (pH 8.3); Screen: Classics II (D10), 0.1M Bis-Tris (pH 6.5), 20% (w/v) PEG5000 MME
Crystal Properties
Matthews coefficientSolvent content
1.831.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.755α = 90
b = 59.784β = 90
c = 75.625γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDBe2019-03-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-E0.97872APS21-ID-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.653099.50.0690.0690.0790.03724.34.327958-322.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.68990.6870.6870.7870.3790.712.44.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.6527.0626532137699.190.17750.17590.2079RANDOM25.796
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.05-0.390.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.814
r_dihedral_angle_4_deg14.337
r_dihedral_angle_3_deg8.965
r_dihedral_angle_1_deg3.065
r_angle_refined_deg1.365
r_angle_other_deg0.342
r_chiral_restr0.063
r_gen_planes_refined0.054
r_gen_planes_other0.049
r_bond_refined_d0.006
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.814
r_dihedral_angle_4_deg14.337
r_dihedral_angle_3_deg8.965
r_dihedral_angle_1_deg3.065
r_angle_refined_deg1.365
r_angle_other_deg0.342
r_chiral_restr0.063
r_gen_planes_refined0.054
r_gen_planes_other0.049
r_bond_refined_d0.006
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1539
Nucleic Acid Atoms
Solvent Atoms251
Heterogen Atoms11

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing