7WAQ

SbSOMT in complex with resveratrol

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7VB8

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		291	0.1 M MES pH 6.5, 0.2 M ammonium sulphate, 30% (w/v) polyethylene glycol monomethyl ether 5000

Crystal Properties
Matthews coefficient	Solvent content
2.15	42.85

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 97.485	α = 90
b = 111.733	β = 90
c = 131.102	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	PSI PILATUS 6M		2020-12-05	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL19U1	0.978530	SSRF	BL19U1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.55	48.956	99.9	0.118	0.127	0.048	0.999	16.3	13.2		46864			52.2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.56	2.65	100		1.156	1.247	0.468	0.902	2.4	13.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	7VB8	2.56	48.956	46802	2368	99.932	0.19	0.1864	0.2567	65.847

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-6.587			0.516		6.072

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	19.694
r_dihedral_angle_3_deg	19.332
r_dihedral_angle_6_deg	15.446
r_lrange_it	12.62
r_lrange_other	12.62
r_scangle_it	10.459
r_scangle_other	10.458
r_mcangle_it	9.851
r_mcangle_other	9.851
r_dihedral_angle_1_deg	8.285
r_scbond_it	7.85
r_scbond_other	7.849
r_mcbond_it	7.051
r_mcbond_other	7.05
r_angle_refined_deg	2.381
r_angle_other_deg	0.79
r_nbd_refined	0.238
r_symmetry_nbd_other	0.206
r_nbtor_refined	0.189
r_nbd_other	0.188
r_symmetry_nbd_refined	0.182
r_xyhbond_nbd_refined	0.18
r_symmetry_xyhbond_nbd_other	0.142
r_ncsr_local_group_5	0.139
r_ncsr_local_group_3	0.138
r_ncsr_local_group_4	0.138
r_ncsr_local_group_2	0.135
r_ncsr_local_group_1	0.133
r_ncsr_local_group_6	0.13
r_symmetry_xyhbond_nbd_refined	0.119
r_chiral_restr	0.102
r_symmetry_nbtor_other	0.092
r_bond_refined_d	0.018
r_gen_planes_refined	0.013
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	11270
Nucleic Acid Atoms
Solvent Atoms	63
Heterogen Atoms	92

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing