GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 2A9K designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2A9K_GDP_A_500 | 99% | 43% | 0.048 | 0.981 | 0.95 | 1.26 | 1 | 5 | 0 | 0 | 100% | 1 |
2A78_GDP_A_500 | 99% | 49% | 0.056 | 0.987 | 0.87 | 1.11 | - | 4 | 0 | 0 | 100% | 1 |
6P0O_GDP_B_201 | 99% | 49% | 0.063 | 0.99 | 0.82 | 1.14 | 1 | 3 | 0 | 0 | 100% | 1 |
6P0K_GDP_B_504 | 98% | 48% | 0.066 | 0.991 | 0.9 | 1.09 | 2 | 2 | 0 | 0 | 100% | 1 |
6P0N_GDP_B_505 | 98% | 48% | 0.067 | 0.99 | 0.87 | 1.14 | 1 | 2 | 0 | 0 | 100% | 1 |
8FJH_GDP_B_201 | 98% | 50% | 0.064 | 0.984 | 0.84 | 1.07 | - | 4 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |