2NCD | pdb_00002ncd


ADP: ADENOSINE-5'-DIPHOSPHATE

ADP is a Ligand Of Interest in 2NCD designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2NCD_ADP_A_800Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2NCD_ADP_A_800Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2NCD_ADP_A_800Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2NCD_ADP_A_800 2% 3% 0.418 0.6982.8 3.12 6 770100%1
3L1C_ADP_B_999 82% 25% 0.111 0.9670.91 2.13 1 910100%1
3U06_ADP_A_1 59% 37% 0.185 0.970.97 1.47 1 500100%1
5W3D_ADP_A_802 56% 32% 0.197 0.971.12 1.55 2 630100%1
3KB1_ADP_A_301 100% 22% 0.021 0.9962.06 1.21 6 410100%1
3TW6_ADP_B_2000 100% 44% 0.019 0.9970.83 1.34 - 430100%1
5GZA_ADP_A_401 100% 2% 0.019 0.9973.36 3.39 13 1110100%1
5KHW_ADP_A_1201 100% 41% 0.023 0.9951.1 1.2 1 200100%1
8VZA_ADP_A_603 100% 37% 0.024 0.9950.96 1.51 1 500100%1