2PD8 | pdb_00002pd8


FAD: FLAVIN-ADENINE DINUCLEOTIDE

FAD is a Ligand Of Interest in 2PD8 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2PD8_FAD_A_5201Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2PD8_FAD_A_5201Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2PD8_FAD_A_5201Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2PD8_FAD_A_5201 71% 36% 0.121 0.9431.57 0.95 9 220100%1
2PD8_FAD_B_7202 55% 35% 0.145 0.9131.63 0.93 10 230100%1
3IS2_FAD_A_201 80% 36% 0.099 0.9471.62 0.91 10 230100%1
2PDR_FAD_A_201 71% 19% 0.12 0.9421.89 1.59 10 630100%1
3HJI_FAD_A_201 65% 38% 0.143 0.9441.55 0.88 8 220100%1
3D72_FAD_A_201 60% 39% 0.141 0.9261.51 0.9 8 230100%1
2PD7_FAD_A_5201 52% 32% 0.172 0.9311.69 1.01 10 530100%1
1LQU_FAD_A_1457 100% 43% 0.023 0.9951.03 1.18 2 500100%1
2R4J_FAD_B_600 100% 13% 0.024 0.9952 1.99 18 19 00100%1
3IC9_FAD_B_490 100% 32% 0.025 0.9961.23 1.45 7 800100%1
4OMF_FAD_B_405 100% 14% 0.015 0.9982.27 1.57 9 1300100%1
9GXB_FAD_A_301 100% 75% 0.022 0.9950.45 0.53 - 110100%1