Ligand validation:2YP8

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 2YP8 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2YP8_NAG_A_1285	38%	48%	0.118	0.819	0.78	1.2	-	2	0	0	100%	0.9333
2YP8_NAG_A_1063	36%	65%	0.121	0.812	0.47	0.85	-	-	0	0	100%	0.9333
2YP8_NAG_A_1038	30%	62%	0.133	0.793	0.38	1.04	-	1	0	0	100%	0.9333
2YP8_NAG_A_1133	10%	57%	0.181	0.677	0.57	1.07	-	1	0	1	100%	0.9333
2YP8_NAG_A_1483	3%	57%	0.22	0.546	0.56	1.07	-	1	0	0	100%	0.9333
2YP8_NAG_A_1126	2%	64%	0.179	0.425	0.58	0.79	-	-	0	0	100%	0.9333
8FAW_NAG_A_601	73%	34%	0.115	0.941	0.67	1.92	-	4	1	0	100%	0.9333
4WE8_NAG_A_608	64%	57%	0.152	0.95	0.49	1.14	-	1	0	0	100%	0.9333
2YP2_NAG_A_812	59%	50%	0.115	0.896	0.74	1.19	-	2	0	0	100%	0.9333
8FAQ_NAG_A_602	52%	61%	0.151	0.907	0.43	1.05	-	1	0	0	100%	0.9333
4WE9_NAG_A_608	47%	81%	0.158	0.897	0.32	0.5	-	-	0	0	100%	0.9333
5LDS_NAG_B_1007	100%	67%	0.022	0.995	0.48	0.79	-	-	0	0	100%	0.9333
5O5D_NAG_A_601	100%	65%	0.022	0.994	0.32	0.99	-	1	0	0	100%	0.9333
6MUG_NAG_G_629	100%	76%	0.022	0.994	0.35	0.58	-	-	0	0	100%	0.9333
3PPS_NAG_B_760	100%	44%	0.028	0.993	0.57	1.57	-	3	0	0	100%	0.9333
5O59_NAG_A_601	100%	70%	0.024	0.993	0.3	0.85	-	-	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.