Ligand validation:5DGD

TPP: THIAMINE DIPHOSPHATE

TPP is a Ligand Of Interest in 5DGD designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5DGD_TPP_A_607	98%	8%	0.065	0.991	2.85	1.86	5	6	0	0	100%	1
4MPJ_TPP_A_604	100%	28%	0.031	0.991	1.34	1.53	3	6	0	0	100%	1
4MQ5_TPP_A_603	100%	32%	0.04	0.99	1.23	1.46	1	6	0	0	100%	1
5DEI_TPP_C_602	99%	10%	0.054	0.994	2.04	2.32	6	11	1	0	100%	1
2FWN_TPP_A_530	99%	10%	0.054	0.99	2.95	1.48	2	6	0	0	100%	1
4MPR_TPP_A_602	99%	17%	0.055	0.982	1.7	1.9	4	6	1	0	100%	1
2AG1_TPP_D_632	100%	1%	0.016	0.998	6	2.06	5	8	0	0	100%	1
9BT4_TPP_D_302	100%	49%	0.02	0.997	1.07	0.92	2	2	1	0	100%	1
4KXW_TPP_A_1015	100%	39%	0.032	0.998	1.23	1.16	2	4	1	0	100%	1
4KGD_TPP_A_704	100%	22%	0.035	0.997	1.74	1.51	4	7	0	0	100%	0.97
2VJY_TPP_A_600	100%	16%	0.033	0.991	1.59	2.12	3	8	9	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.