NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose
NDG is a Ligand Of Interest in 5KV8 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5KV8_NDG_A_601 | 28% | 12% | 0.187 | 0.849 | 2.43 | 1.67 | 2 | 2 | 5 | 0 | 93% | 0.9333 |
5KV8_NDG_B_602 | 26% | 27% | 0.178 | 0.833 | 1.31 | 1.63 | 2 | 3 | 1 | 0 | 93% | 0.9333 |
5KV8_NDG_A_602 | 19% | 17% | 0.17 | 0.778 | 1.94 | 1.7 | 2 | 2 | 3 | 0 | 93% | 0.9333 |
5KV8_NDG_B_603 | 16% | 55% | 0.227 | 0.807 | 1 | 0.76 | 1 | - | 1 | 0 | 93% | 0.9333 |
5KV8_NDG_B_601 | 11% | 16% | 0.209 | 0.737 | 1.59 | 2.1 | 1 | 3 | 2 | 0 | 93% | 0.9333 |
5KV8_NDG_A_603 | 8% | 30% | 0.281 | 0.758 | 1.64 | 1.15 | 1 | 2 | 1 | 0 | 93% | 0.9333 |
5KV8_NDG_B_611 | 7% | 42% | 0.361 | 0.829 | 1.46 | 0.83 | 1 | 1 | 2 | 0 | 93% | 0.9333 |
5KV8_NDG_A_610 | 6% | 42% | 0.324 | 0.768 | 1.48 | 0.8 | 1 | 1 | 1 | 0 | 93% | 0.9333 |
4OCJ_NDG_A_401 | 99% | 66% | 0.042 | 0.978 | 0.55 | 0.75 | - | - | 0 | 0 | 100% | 1 |
3MAW_NDG_A_519 | 98% | 71% | 0.042 | 0.973 | 0.52 | 0.61 | - | - | 0 | 0 | 93% | 0.9333 |
4GVF_NDG_A_401 | 97% | 29% | 0.06 | 0.978 | 1.66 | 1.18 | 4 | 2 | 0 | 0 | 100% | 0.7 |
2UVO_NDG_B_1176 | 97% | 71% | 0.059 | 0.975 | 0.42 | 0.68 | - | - | 0 | 0 | 100% | 1 |
2ZUV_NDG_A_2001 | 97% | 50% | 0.066 | 0.978 | 0.54 | 1.38 | - | 2 | 0 | 0 | 100% | 1 |