UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5V0T designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5V0T_UDP_F_501 | 98% | 87% | 0.064 | 0.989 | 0.36 | 0.34 | - | - | 0 | 0 | 100% | 1 |
| 5V0T_UDP_E_501 | 98% | 72% | 0.07 | 0.992 | 0.44 | 0.62 | - | 1 | 0 | 0 | 100% | 1 |
| 5V0T_UDP_A_501 | 98% | 71% | 0.071 | 0.993 | 0.53 | 0.6 | - | 1 | 0 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 97% | 73% | 0.075 | 0.992 | 0.43 | 0.62 | - | 1 | 0 | 0 | 100% | 1 |
| 5V0T_UDP_C_501 | 97% | 72% | 0.074 | 0.988 | 0.41 | 0.67 | - | 1 | 0 | 0 | 100% | 1 |
| 5V0T_UDP_D_501 | 97% | 78% | 0.076 | 0.99 | 0.42 | 0.47 | - | - | 0 | 0 | 100% | 1 |
| 5V0T_UDP_G_501 | 97% | 71% | 0.072 | 0.984 | 0.52 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 5V0T_UDP_H_501 | 95% | 67% | 0.082 | 0.987 | 0.6 | 0.66 | - | 1 | 0 | 0 | 100% | 1 |
| 8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
| 4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
| 2IV7_UDP_A_1372 | 100% | 40% | 0.035 | 0.984 | 0.85 | 1.49 | - | 4 | 0 | 0 | 100% | 1 |
