6D5K | pdb_00006d5k


5AD: 5'-DEOXYADENOSINE

5AD is a Ligand Of Interest in 6D5K designated by the Author


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter6D5K_5AD_A_301Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter6D5K_5AD_A_301Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter6D5K_5AD_A_301Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
6D5K_5AD_A_301 75% 58% 0.135 0.9680.67 0.92 - 120100%0.93
6D5K_5AD_B_301 17% 60% 0.291 0.8740.64 0.9 - 100100%0.98
7RUU_5AD_A_304 92% 16% 0.071 0.9611.87 1.83 4 410100%1
7RUV_5AD_B_302 89% 18% 0.087 0.9671.75 1.77 4 420100%1
6D5X_5AD_A_301 71% 61% 0.125 0.9470.66 0.81 - 120100%0.94
5HR6_5AD_A_503 100% 15% 0.031 0.9960.97 2.72 1 510100%1
3IIX_5AD_A_1501 100% 35% 0.038 0.9821 1.55 2 210100%1
5EXK_5AD_I_403 100% 58% 0.037 0.9780.77 0.84 - 100100%1
5FEZ_5AD_A_408 98% 30% 0.053 0.9771.19 1.57 2 310100%1
8JBS_5AD_B_302 98% 55% 0.053 0.9740.65 1.08 - 210100%1