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1FH1 \| pdb_00001fh1	Download File View File

BACKBONE FOLD OF NODF

Fowler, C.A., Tian, F., Al-Hashimi, H.M., Prestegard, J.H.

(2000) J Mol Biology 304: 447-460

Released	2001-01-17
Method	SOLUTION NMR
Organisms	Rhizobium leguminosarum
Macromolecule	NODULATION PROTEIN F (protein)

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5UZD \| pdb_00005uzd	Download File View File

Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A2-DNA structure

Sathyamoorthy, B., Shi, H., Xue, Y., Al-Hashimi, H.M.

(2017) Nucleic Acids Res 45: 5586-5601

Released	2017-04-05
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPCPAPTPCPGPAPTPTPGPGPC)-3') (nucleic acid) DNA (5'-D(GPCPCPAPAPTPCPGPAPTPGPC)-3') (nucleic acid)

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5UZF \| pdb_00005uzf	Download File View File

Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNA structure

Sathyamoorthy, B., Shi, H., Xue, Y., Al-Hashimi, H.M.

(2017) Nucleic Acids Res 45: 5586-5601

Released	2017-04-05
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPGPAPTPTPTPTPTPTPGPGPC)-3') (nucleic acid) DNA (5'-D(GPCPCPAPAPAPAPAPAPTPCPG)-3') (nucleic acid)

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5UZI \| pdb_00005uzi	Download File View File

Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNAm1A16 structure

Sathyamoorthy, B., Shi, H., Xue, Y., Al-Hashimi, H.M.

(2017) Nucleic Acids Res 45: 5586-5601

Released	2017-04-05
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPGPAPTPTPTPTPTPTPGPGPC)-3') (nucleic acid) DNA (5'-D(GPCPCP(M1A)PAPAPAPAPAPTPCPG)-3') (nucleic acid)

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7JU1 \| pdb_00007ju1	Download File View File

The FARFAR-NMR Ensemble of 29-mer HIV-1 Trans-activation Response Element RNA (N=20)

Shi, H., Rangadurai, A., Roy, R., Yesselman, J.D., Al-Hashimi, H.M.

(2020) Nat Commun 11: 5531

Released	2020-10-07
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	RNA (29-MER) (nucleic acid)

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8THV \| pdb_00008thv	Download File View File

FARFAR-NMR ensemble of HIV-1 TAR with apical loop capturing ground and excited conformational states

Roy, R., Geng, A., Shi, H., Merriman, D.K., Dethoff, E.A., Salmon, L., Al-Hashimi, H.M.

(2023) J Am Chem Soc 145: 22964-22978

Released	2023-08-02
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	RNA (29-MER) (nucleic acid)

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8U3M \| pdb_00008u3m	Download File View File

The FARFAR-MD-NMR ensemble of an HIV-1 TAR excited state

Geng, A., Ganser, L., Roy, R., Shi, H., Pratihar, S., Case, D.A., Al-Hashimi, H.M.

(2023) Nat Commun 14: 8432-8432

Released	2023-10-04
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	The excited state of HIV-1 transactivation response element (31-MER) (nucleic acid)

1FH1 | pdb_00001fh1

BACKBONE FOLD OF NODF

5UZD | pdb_00005uzd

Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A2-DNA structure

5UZF | pdb_00005uzf

Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNA structure

5UZI | pdb_00005uzi

Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNAm1A16 structure

7JU1 | pdb_00007ju1

The FARFAR-NMR Ensemble of 29-mer HIV-1 Trans-activation Response Element RNA (N=20)

8THV | pdb_00008thv

FARFAR-NMR ensemble of HIV-1 TAR with apical loop capturing ground and excited conformational states

8U3M | pdb_00008u3m

The FARFAR-MD-NMR ensemble of an HIV-1 TAR excited state

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1FH1 | pdb_00001fh1

BACKBONE FOLD OF NODF

5UZD | pdb_00005uzd

Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A2-DNA structure

5UZF | pdb_00005uzf

Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNA structure

5UZI | pdb_00005uzi

Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNAm1A16 structure

7JU1 | pdb_00007ju1

The FARFAR-NMR Ensemble of 29-mer HIV-1 Trans-activation Response Element RNA (N=20)

8THV | pdb_00008thv

FARFAR-NMR ensemble of HIV-1 TAR with apical loop capturing ground and excited conformational states

8U3M | pdb_00008u3m

The FARFAR-MD-NMR ensemble of an HIV-1 TAR excited state