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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Alian, A."

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Homo sapiens (10)
	Mycobacterium tuberculosis H37Rv (5)
	Cyanophage S-TIM5 (3)
	Feline immunodeficiency virus (isolate Petaluma) (3)
	Pseudomonas putida (3)
	Escherichia coli (2)
	Human immunodeficiency virus 1 (2)
	synthetic construct (2)
	Feline immunodeficiency virus (1)
	Mycobacterium tuberculosis CDC1551 (1)

Taxonomy

	Bacteria (11)
	Eukaryota (10)
	Riboviria (6)
	Duplodnaviria (3)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (24)
	ELECTRON MICROSCOPY (3)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (29)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (10)
	2.0 - 2.5 (5)
	2.5 - 3.0 (7)
	3.0 - 3.5 (3)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (11)
	2015 - 2019 (4)
	2020 - 2024 (8)

Enzyme Classification Name

	Transferases (7)
	Oxidoreductases (9)
	Isomerases (1)
	Hydrolases (1)

Symmetry Type

	Asymmetric (14)
	Dihedral (8)
	Cyclic (4)
	Helical (4)

SCOP Classification

	All alpha proteins (5)
	Alpha and beta proteins (a/b) (9)
	All beta proteins (3)
	Artifacts (3)

AllSelected

1 to 25 of 29 Structures

Page 1 of 2

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2H7Q \| pdb_00002h7q	Download File View File

Cytochrome P450cam complexed with imidazole

Verras, A., Alian, A., Montellano, P.R.

(2006) Protein Eng Des Sel 19: 491-496

Released	2006-10-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudomonas putida
Macromolecule	Cytochrome P450-cam (protein)
Unique Ligands	HEM, IMD

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2H7R \| pdb_00002h7r	Download File View File

L244A mutant of Cytochrome P450cam complexed with imidazole

Verras, A., Alian, A., Montellano, P.R.

(2006) Protein Eng Des Sel 19: 491-496

Released	2006-10-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudomonas putida
Macromolecule	Cytochrome P450-cam (protein)
Unique Ligands	1MZ, HEM

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2H7S \| pdb_00002h7s	Download File View File

L244A mutant of Cytochrome P450cam

Verras, A., Alian, A., Montellano, P.R.

(2006) Protein Eng Des Sel 19: 491-496

Released	2006-10-31
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Pseudomonas putida
Macromolecule	Cytochrome P450-cam (protein)
Unique Ligands	HEC

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2NSD \| pdb_00002nsd	Download File View File

Enoyl acyl carrier protein reductase InhA in complex with N-(4-methylbenzoyl)-4-benzylpiperidine

He, X., Alian, A., Ortiz de Montellano, P.R.

(2007) Bioorg Med Chem 15: 6649-6658

Released	2007-09-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Enoyl-[acyl-carrier-protein] reductase (protein)
Unique Ligands	4PI, NAD

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3BT7 \| pdb_00003bt7	Download File View File

Structure of E. coli 5-Methyluridine Methyltransferase TrmA in complex with 19 nucleotide T-arm analogue

Alian, A., Stroud, R.M., Finer-Moore, J.

(2008) Proc Natl Acad Sci U S A 105: 6876-6881

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	tRNA (uracil-5-)-methyltransferase (protein) RNA (5'-D(PGPCPUPGPUPGP(5MU)PUPCPGPAPUPCPCPAPCPAPGP*C)-3') (nucleic acid)

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3DH3 \| pdb_00003dh3	Download File View File

Crystal Structure of RluF in complex with a 22 nucleotide RNA substrate

Alian, A., DeGiovanni, A., Stroud, R.M., Finer-Moore, J.S.

(2009) J Mol Biology 388: 785-800

Released	2009-04-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	Ribosomal large subunit pseudouridine synthase F (protein) stem loop fragment of E. Coli 23S RNA (nucleic acid)

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4MQ3 \| pdb_00004mq3	Download File View File

The 1.1 Angstrom Structure of Catalytic Core Domain of FIV Integrase

Galilee, M., Alian, A.

(2014) Structure 22: 1512-1519

Released	2014-09-17
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Feline immunodeficiency virus (isolate Petaluma)
Macromolecule	Integrase (protein)

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4P9C \| pdb_00004p9c	Download File View File

Crystal structure of dCMP deaminase from the cyanophage S-TIM5 in complex with dCMP and dUMP

Marx, A., Alian, A.

(2015) J Biological Chem 290: 682-690

Released	2014-11-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Cyanophage S-TIM5
Macromolecule	Deoxycytidylate deaminase (protein)
Unique Ligands	DCM, DU, ZN

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4P9D \| pdb_00004p9d	Download File View File

Crystal structure of dCMP deaminase from the cyanophage S-TIM5 in complex with dTMP and dTTP.

Marx, A., Alian, A.

(2015) J Biological Chem 290: 682-690

Released	2014-11-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Cyanophage S-TIM5
Macromolecule	Deoxycytidylate deaminase (protein)
Unique Ligands	CL, MG, TMP, TTP, ZN

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4P9E \| pdb_00004p9e	Download File View File

Crystal structure of dCMP deaminase from the cyanophage S-TIM5 in apo form

Marx, A., Alian, A.

(2015) J Biological Chem 290: 682-690

Released	2014-11-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Cyanophage S-TIM5
Macromolecule	Deoxycytidylate deaminase (protein)
Unique Ligands	CL, ZN

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4PA1 \| pdb_00004pa1	Download File View File

Crystal Structure of Catalytic Core domain of FIV Integrase

Galilee, M., Alian, A.

(2014) Structure 22: 1512-1519

Released	2014-09-17
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Feline immunodeficiency virus (isolate Petaluma)
Macromolecule	Integrase (protein)

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4TRJ \| pdb_00004trj	Download File View File

Crystal structure of Mycobacterium tuberculosis enoyl reductase (INHA) complexed with N-(3-bromophenyl)-1-cyclohexyl-5-oxopyrrolidine-3-carboxamide, refined with new ligand restraints

He, X., Alian, A., Stroud, R.M., Ortiz de Montellano, P.R.

(2006) J Med Chem 6308-6323

Released	2014-08-13
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	665, NAD

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4TZK \| pdb_00004tzk	Download File View File

Crystal structure of Mycobacterium tuberculosis enoyl reductase (INHA) complexed WITH 1-CYCLOHEXYL-N-(3,5-DICHLOROPHENYL)-5-OXOPYRROLIDINE-3-CARBOXAMIDE

He, X., Alian, A., Stroud, R.M., Ortiz de Montellano, P.R.

(2006) J Med Chem 6308-6323

Released	2014-08-20
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	641, NAD

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4TZT \| pdb_00004tzt	Download File View File

CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS ENOYL REDUCTASE (INHA) COMPLEXED WITH N-(3-CHLORO-2-METHYLPHENYL)-1-CYCLOHEXYL- 5-OXOPYRROLIDINE-3-CARBOXAMIDE

He, X., Alian, A., Stroud, R.M., Ortiz de Montellano, P.R.

(2006) J Med Chem 6308-6323

Released	2014-08-20
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	468, NAD

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4U0J \| pdb_00004u0j	Download File View File

Crystal structure of Mycobacterium tuberculosis enoyl reductase (INHA) complexed with 1-CYCLOHEXYL-5-OXO-N-PHENYLPYRROLIDINE-3-CARBOXAMIDE, refined with new ligand restraints

He, X., Alian, A., Stroud, R.M., Ortiz de Montellano, P.R.

(2006) J Med Chem 6308-6323

Released	2014-07-30
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	566, NAD

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4U0K \| pdb_00004u0k	Download File View File

Crystal structure of Mycobacterium tuberculosis enoyl reductase complexed with N-(5-chloro-2-methylphenyl)-1-cyclohexyl-5-oxopyrrolidine-3-carboxamide

He, X., Alian, A., Stroud, R.M., Ortiz de Montellano, P.R.

(2006) J Med Chem 6308-6323

Released	2014-07-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	744, NAD

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4WYV \| pdb_00004wyv	Download File View File

Crystal Structure of Human Translin in Open Conformation

Dvir, H., Eliahoo, E., Alian, A.

(2015) J Mol Biology 427: 756-762

Released	2014-11-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Translin (protein)

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5DCK \| pdb_00005dck	Download File View File

Crystal Structure of FIV Capsid C-Terminal Domain

Galilee, M., Khwaja, A., Alian, A.

(2016) Sci Rep 6: 24957-24957

Released	2016-04-20
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Feline immunodeficiency virus (isolate Petaluma)
Macromolecule	Capsid C-Terminal Domain (protein)

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5EU7 \| pdb_00005eu7	Download File View File

Crystal structure of HIV-1 integrase catalytic core in complex with Fab

Galilee, M., Griner, S.L., Stroud, R.M., Alian, A.

(2016) Structure 24: 1936-1946

Released	2016-09-28
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	FAB Heavy Chain (protein) FAB light chain (protein) Integrase (protein)

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5OVN \| pdb_00005ovn	Download File View File

Crystal Structure of FIV Reverse Transcriptase

Galilee, M., Alian, A.

(2018) PLoS Pathog 14: e1006849-e1006849

Released	2018-01-17
Method	X-RAY DIFFRACTION 2.942 Å
Organisms	Feline immunodeficiency virus
Macromolecule	POL protein (protein)

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6EX9 \| pdb_00006ex9	Download File View File

Crystal Structure of HIV-1 Integrase Catalytic Core Domain with Inhibitor Peptide

Galilee, M., Alian, A.

(2018) bioRxiv

Released	2018-06-06
Method	X-RAY DIFFRACTION 2.014 Å
Organisms	Human immunodeficiency virus 1 synthetic construct
Macromolecule	Inhibitor Peptide (protein) Integrase (protein)

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7LP1 \| pdb_00007lp1	Download File View File

Structure of Nedd4L WW3 domain

Alian, A., Alam, S.L., Thompson, T., Rheinemann, L., Sundquist, W.I.

(2021) J Biological Chem 297: 100975-100975

Released	2021-07-28
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase NEDD4-like (protein)
Unique Ligands	GOL, NO3

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7LP2 \| pdb_00007lp2	Download File View File

Structure of Nedd4L WW3 domain

Alian, A., Alam, S.L., Thompson, T., Rheinemann, L., Sundquist, W.I.

(2021) J Biological Chem 297: 100975-100975

Released	2021-07-28
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Angiomotin (protein) E3 ubiquitin-protein ligase (protein)
Unique Ligands	GOL, SO4

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7LP3 \| pdb_00007lp3	Download File View File

Structure of Nedd4L WW3 domain

Alian, A., Alam, S.L., Thompson, T., Rheinemann, L., Sundquist, W.I.

(2021) J Biological Chem 297: 100975-100975

Released	2021-07-28
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Homo sapiens
Macromolecule	Angiomotin (protein) E3 ubiquitin-protein ligase NEDD4-like (protein)
Unique Ligands	SO4