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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Beaumont, E."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

Homo sapiens (12)

Taxonomy

Eukaryota (12)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (2)
	2.0 - 2.5 (6)
	2.5 - 3.0 (3)

Release Date

	2010 - 2014 (4)
	2015 - 2019 (4)
	2020 - 2024 (4)

Enzyme Classification Name

Hydrolases (5)

Symmetry Type

	Asymmetric (6)
	Cyclic (6)

SCOP Classification

	All beta proteins (8)
	Artifacts (3)
	Alpha and beta proteins (a+b) (4)

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1 to 12 of 12 Structures

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4L7B \| pdb_00004l7b	Download File View File

Structure of keap1 kelch domain with (1S,2R)-2-{[(1S)-1-[(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)methyl]-3,4-dihydroisoquinolin-2(1H)-yl]carbonyl}cyclohexanecarboxylic acid

Jnoff, E., Brookfield, F., Albrecht, C., Barker, J.J., Barker, O., Beaumont, E., Bromidge, S., Brooks, M., Ceska, T., Courade, J.P., Crabbe, T., Duclos, S., Fryatt, T., Jigorel, E., Kwong, J., Sands, Z., Smith, M.A.

(2014) ChemMedChem 9: 699-705

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Homo sapiens
Macromolecule	Kelch-like ECH-associated protein 1 (protein)
Unique Ligands	1VV, ACT, NA

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4L7C \| pdb_00004l7c	Download File View File

Structure of keap1 kelch domain with 2-{[(1S)-2-{[(1R,2S)-2-(1H-tetrazol-5-yl)cyclohexyl]carbonyl}-1,2,3,4-tetrahydroisoquinolin-1-yl]methyl}-1H-isoindole-1,3(2H)-dione

(2014) ChemMedChem 9: 699-705

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Kelch-like ECH-associated protein 1 (protein)
Unique Ligands	1VW, ACT

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4L7D \| pdb_00004l7d	Download File View File

Structure of keap1 kelch domain with (1S,2R)-2-{[(1S)-5-methyl-1-[(1-oxo-1,3-dihydro-2H-isoindol-2-yl)methyl]-3,4-dihydroisoquinolin-2(1H)-yl]carbonyl}cyclohexanecarboxylic acid

(2014) ChemMedChem 9: 699-705

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Kelch-like ECH-associated protein 1 (protein)
Unique Ligands	1VX, ACT

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4N1B \| pdb_00004n1b	Download File View File

STRUCTURE OF KEAP1 KELCH DOMAIN WITH(1S,2R)-2-[(1S)-1-[(1-oxo-2,3-dihydro-1H-isoindol-2-Yl)methyl]-1,2,3,4-tetrahydroisoquinoline-2-Carbonyl]cyclohexane-1-carboxylic acid

Smith, M.A., Duclos, S., Beaumont, E., Kwong, J., Brooks, M., Barker, J., Jnoff, E., Brookfield, F., Courade, J.P., Barker, O., Fryatt, T., Albrecht, C., Bromidge, S.

(2014) ChemMedChem 9: 699-705

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Kelch-like ECH-associated protein 1 (protein)
Unique Ligands	2FS, ACT

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5N0M \| pdb_00005n0m	Download File View File

hPAD4 crystal complex with BB-F-amidine

Beaumont, E., Kerry, P., Thompson, P., Muth, A., Subramanian, V., Nagar, M., Srinath, H., Clancy, K., Parelkar, S.

(2017) J Med Chem 60: 3198-3211

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	8HT, CA, SO4

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5N0Y \| pdb_00005n0y	Download File View File

hPAD4 crystal complex with AFM-30a

Beaumont, E., Kerry, P., Thompson, P., Muth, A., Subramanian, V., Nagar, M., Srinath, H., Clancy, K., Parelkar, S.

(2017) J Med Chem 60: 3198-3211

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	8FQ, CA, SO4

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5N0Z \| pdb_00005n0z	Download File View File

hPAD4 crystal complex with AFM-41a

Beaumont, E., Kerry, P., Thompson, P., Muth, A., Subramanian, V., Nagar, M., Srinath, H., Clancy, K., Parelkar, S.

(2017) J Med Chem 60: 3198-3211

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	8FT, CA, SO4

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5N1B \| pdb_00005n1b	Download File View File

hPAD4 crystal complex with AFM-14a

Beaumont, E., Kerry, P., Thompson, P., Muth, A., Subramanian, V., Nagar, M., Srinath, H., Clancy, K., Parelkar, S.

(2017) J Med Chem 60: 3198-3211

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	8FW, CA, SO4

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7PAC \| pdb_00007pac	Download File View File

The crystal structure of PDE6D in the apo state

Beaumont, E., Williams, D.

(2022) Blood Cancer J 12: 64-64

Released	2022-06-08
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta (protein)
Unique Ligands	EPE, NI

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7PAD \| pdb_00007pad	Download File View File

The crystal structure of DW-0254 in complex with PDE6D

Beaumont, E., Williams, D.

(2022) Blood Cancer J 12: 64-64

Released	2022-06-08
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta (protein)
Unique Ligands	EPE, GOL, NI, O7W

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7PAE \| pdb_00007pae	Download File View File

The crystal structure of Deltarasin in complex with PDE6D

Beaumont, E., Williams, D.

(2022) Blood Cancer J 12: 64-64

Released	2022-06-08
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta (protein)
Unique Ligands	ACY, O7T

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8QL0 \| pdb_00008ql0	Download File View File

Structure of human PAD6 Phosphomimic mutant V10E/S446E, apo

Ranaivoson, F.M., Beaumont, E.

(2024) IUCrJ 11: 395-404

Released	2024-05-08
Method	X-RAY DIFFRACTION 1.675 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-6 (protein)
Unique Ligands	1PE, CL, GOL, PEG

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4L7B | pdb_00004l7b

Structure of keap1 kelch domain with (1S,2R)-2-{[(1S)-1-[(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)methyl]-3,4-dihydroisoquinolin-2(1H)-yl]carbonyl}cyclohexanecarboxylic acid

4L7C | pdb_00004l7c

Structure of keap1 kelch domain with 2-{[(1S)-2-{[(1R,2S)-2-(1H-tetrazol-5-yl)cyclohexyl]carbonyl}-1,2,3,4-tetrahydroisoquinolin-1-yl]methyl}-1H-isoindole-1,3(2H)-dione

4L7D | pdb_00004l7d

Structure of keap1 kelch domain with (1S,2R)-2-{[(1S)-5-methyl-1-[(1-oxo-1,3-dihydro-2H-isoindol-2-yl)methyl]-3,4-dihydroisoquinolin-2(1H)-yl]carbonyl}cyclohexanecarboxylic acid

4N1B | pdb_00004n1b

STRUCTURE OF KEAP1 KELCH DOMAIN WITH(1S,2R)-2-[(1S)-1-[(1-oxo-2,3-dihydro-1H-isoindol-2-Yl)methyl]-1,2,3,4-tetrahydroisoquinoline-2-Carbonyl]cyclohexane-1-carboxylic acid

5N0M | pdb_00005n0m

hPAD4 crystal complex with BB-F-amidine

5N0Y | pdb_00005n0y

hPAD4 crystal complex with AFM-30a

5N0Z | pdb_00005n0z

hPAD4 crystal complex with AFM-41a

5N1B | pdb_00005n1b

hPAD4 crystal complex with AFM-14a

7PAC | pdb_00007pac

The crystal structure of PDE6D in the apo state

7PAD | pdb_00007pad

The crystal structure of DW-0254 in complex with PDE6D

7PAE | pdb_00007pae

The crystal structure of Deltarasin in complex with PDE6D

8QL0 | pdb_00008ql0

Structure of human PAD6 Phosphomimic mutant V10E/S446E, apo

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

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Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4L7B | pdb_00004l7b

4L7C | pdb_00004l7c

4L7D | pdb_00004l7d

4N1B | pdb_00004n1b

5N0M | pdb_00005n0m

5N0Y | pdb_00005n0y

5N0Z | pdb_00005n0z

5N1B | pdb_00005n1b

7PAC | pdb_00007pac

7PAD | pdb_00007pad

7PAE | pdb_00007pae

8QL0 | pdb_00008ql0