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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Bingham, R.J."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Mus musculus (13)
	Homo sapiens (6)
	Staphylococcus aureus subsp. aureus NCTC 8325 (2)
	Glutamicibacter protophormiae (1)
	Staphylococcus aureus (strain NCTC 8325 / PS 47) (1)
	Streptococcus pyogenes (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (19)
	Bacteria (5)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (20)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.5 - 2.0 (14)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (15)
	2010 - 2014 (1)
	2020 - 2024 (1)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Asymmetric (20)
	Cyclic (2)

SCOP Classification

	Small proteins (4)
	All beta proteins (13)

AllSelected

1 to 20 of 20 Structures

Page 1 of 1

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1QY0 \| pdb_00001qy0	Download File View File

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

Bingham, R.J., Findlay, J.B.C., Hsieh, S.-Y., Kalverda, A.P., Kjellberg, A., Perazzolo, C., Phillips, S.E.V., Seshadri, K., Trinh, C.H., Turnbull, W.B., Bodenhausen, G., Homans, S.W.

(2004) J Am Chem Soc 126: 1675-1681

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	Major urinary protein (protein)
Unique Ligands	CD, GOL, NA

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1QY1 \| pdb_00001qy1	Download File View File

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

Bingham, R.J., Findlay, J.B.C., Hsieh, S.-Y., Kalverda, A.P., Kjellberg, A., Perazzolo, C., Phillips, S.E.V., Seshadri, K., Trinh, C.H., Turnbull, W.B., Bodenhausen, G., Homans, S.W.

(2004) J Am Chem Soc 126: 1675-1681

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, NA, PRZ

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1QY2 \| pdb_00001qy2	Download File View File

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

Bingham, R.J., Findlay, J.B.C., Hsieh, S.-Y., Kalverda, A.P., Kjellberg, A., Perazzolo, C., Phillips, S.E.V., Seshadri, K., Trinh, C.H., Turnbull, W.B., Bodenhausen, G., Homans, S.W.

(2004) J Am Chem Soc 126: 1675-1681

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, IPZ, NA

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1YP6 \| pdb_00001yp6	Download File View File

Van der Waals Interactions Dominate Hydrophobic Association in a Protein Binding Site Occluded From Solvent Water

Barratt, E., Bingham, R.J., Warner, D.J., Laughton, C.A., Phillips, S.E.V., Homans, S.W.

(2005) J Am Chem Soc 127: 11827-11834

Released	2005-08-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	MAJOR URINARY PROTEIN 1 (protein)
Unique Ligands	CD, CL, PRZ

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1YP7 \| pdb_00001yp7	Download File View File

Van der Waals Interactions Dominate Hydrophobic Association in a Protein Binding Site Occluded From Solvent Water

Barratt, E., Bingham, R.J., Warner, D.J., Laughton, C.A., Phillips, S.E.V., Homans, S.W.

(2005) J Am Chem Soc 127: 11827-11834

Released	2005-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	MAJOR URINARY PROTEIN 1 (protein)
Unique Ligands	CD

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1ZND \| pdb_00001znd	Download File View File

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Malham, R., Johnstone, S., Bingham, R.J., Barratt, E., Phillips, S.E., Laughton, C.A., Homans, S.W.

(2005) J Am Chem Soc 127: 17061-17067

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, PE9

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1ZNE \| pdb_00001zne	Download File View File

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Malham, R., Johnstone, S., Bingham, R.J., Barratt, E., Phillips, S.E., Laughton, C.A., Homans, S.W.

(2005) J Am Chem Soc 127: 17061-17067

Released	2005-12-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, HE2

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1ZNG \| pdb_00001zng	Download File View File

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Malham, R., Johnstone, S., Bingham, R.J., Barratt, E., Phillips, S.E., Laughton, C.A., Homans, S.W.

(2005) J Am Chem Soc 127: 17061-17067

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, HE4

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1ZNH \| pdb_00001znh	Download File View File

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Malham, R., Johnstone, S., Bingham, R.J., Barratt, E., Phillips, S.E., Laughton, C.A., Homans, S.W.

(2005) J Am Chem Soc 127: 17061-17067

Released	2005-12-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, OC9

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1ZNK \| pdb_00001znk	Download File View File

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Malham, R., Johnstone, S., Bingham, R.J., Barratt, E., Phillips, S.E., Laughton, C.A., Homans, S.W.

(2005) J Am Chem Soc 127: 17061-17067

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, F09

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1ZNL \| pdb_00001znl	Download File View File

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Malham, R., Johnstone, S., Bingham, R.J., Barratt, E., Phillips, S.E., Laughton, C.A., Homans, S.W.

(2005) J Am Chem Soc 127: 17061-17067

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, DE1

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2NND \| pdb_00002nnd	Download File View File

The Structural Identification of the Interaction Site and Functional State of RBP for its Membrane Receptor

Redondo, C., Bingham, R.J., Vouropoulou, M., Homans, S.W., Findlay, J.B.

(2008) FASEB J 22: 1043-1054

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Major urinary protein 2 (protein)
Unique Ligands	CD, PRZ

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2NNE \| pdb_00002nne	Download File View File

The Structural Identification of the Interaction Site and Functional State of RBP for its Membrane Receptor

Redondo, C., Bingham, R.J., Vouropoulou, M., Homans, S.W., Findlay, J.B.

(2008) FASEB J 22: 1043-1054

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Major urinary protein 2 (protein)
Unique Ligands	CD, GOL

Explore in 3D

2RKY \| pdb_00002rky	Download File View File

Crystal structure of the fourth and fifth fibronectin F1 modules in complex with a fragment of staphylococcus aureus fnbpa-1

Bingham, R.J.

(2008) Proc Natl Acad Sci U S A 105: 12254-12258

Released	2008-08-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Staphylococcus aureus (strain NCTC 8325 / PS 47)
Macromolecule	Fibronectin (protein) Fibronectin-binding protein (protein)
Unique Ligands	K, SCN

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2RKZ \| pdb_00002rkz	Download File View File

Crystal structure of the second and third fibronectin f1 modules in complex with a fragment of staphylococcus aureus fnbpa-1

Bingham, R.J.

(2008) Proc Natl Acad Sci U S A 105: 12254-12258

Released	2008-08-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Staphylococcus aureus subsp. aureus NCTC 8325
Macromolecule	Fibronectin (protein) peptide from Fibronectin-binding protein A (protein)
Unique Ligands	SIN

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2RL0 \| pdb_00002rl0	Download File View File

Crystal structure of the fourth and fifth fibronectin F1 modules in complex with a fragment of staphylococcus aureus fnbpa-5

Bingham, R.J.

(2008) Proc Natl Acad Sci U S A 105: 12254-12258

Released	2008-08-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Fibronectin (protein) Fibronectin-binding protein (protein)

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2VTF \| pdb_00002vtf	Download File View File

X-ray crystal structure of the Endo-beta-N-acetylglucosaminidase from Arthrobacter protophormiae E173Q mutant reveals a TIM barrel catalytic domain and two ancillary domains

Ling, Z., Bingham, R.J., Suits, M.D.L., Moir, J.W.B., Fairbanks, A.J., Taylor, E.J.

(2009) J Mol Biology 389: 1

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Glutamicibacter protophormiae
Macromolecule	ENDO-BETA-N-ACETYLGLUCOSAMINIDASE (protein)
Unique Ligands	B3P, PGE

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3CAL \| pdb_00003cal	Download File View File

Crystal structure of the second and third fibronectin F1 modules in complex with a fragment of staphylococcus aureus fnbpa-5

Bingham, R.J.

(2008) Proc Natl Acad Sci U S A 105: 12254-12258

Released	2008-08-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Staphylococcus aureus subsp. aureus NCTC 8325
Macromolecule	Fibronectin (protein) peptide from Fibronectin-binding protein A (protein)

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3ZRZ \| pdb_00003zrz	Download File View File

Crystal structure of the second and third fibronectin F1 modules in complex with a fragment of Streptococcus pyogenes SfbI-5

Norris, N.C., Bingham, R.J., Potts, J.R.

(2011) J Biological Chem 286: 38311

Released	2011-09-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Streptococcus pyogenes
Macromolecule	FIBRONECTIN (protein) FIBRONECTIN-BINDING PROTEIN (protein)
Unique Ligands	GOL, SO4

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6Z9C \| pdb_00006z9c	Download File View File

Structure of human POLDIP2, a multifaceted adaptor protein in metabolism and genome stability

Kulik, A.A., Maruszczak, K., Nabi, N.L.M., Bingham, R.J., Cooper, C.D.O.

(2021) Protein Sci 30: 1196-1209

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Polymerase delta-interacting protein 2 (protein)
Unique Ligands	NA

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1QY0 | pdb_00001qy0

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

1QY1 | pdb_00001qy1

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

1QY2 | pdb_00001qy2

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

1YP6 | pdb_00001yp6

Van der Waals Interactions Dominate Hydrophobic Association in a Protein Binding Site Occluded From Solvent Water

1YP7 | pdb_00001yp7

Van der Waals Interactions Dominate Hydrophobic Association in a Protein Binding Site Occluded From Solvent Water

1ZND | pdb_00001znd

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

1ZNE | pdb_00001zne

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

1ZNG | pdb_00001zng

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

1ZNH | pdb_00001znh

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

1ZNK | pdb_00001znk

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

1ZNL | pdb_00001znl

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

2NND | pdb_00002nnd

The Structural Identification of the Interaction Site and Functional State of RBP for its Membrane Receptor

2NNE | pdb_00002nne

The Structural Identification of the Interaction Site and Functional State of RBP for its Membrane Receptor

2RKY | pdb_00002rky

Crystal structure of the fourth and fifth fibronectin F1 modules in complex with a fragment of staphylococcus aureus fnbpa-1

2RKZ | pdb_00002rkz

Crystal structure of the second and third fibronectin f1 modules in complex with a fragment of staphylococcus aureus fnbpa-1

2RL0 | pdb_00002rl0

Crystal structure of the fourth and fifth fibronectin F1 modules in complex with a fragment of staphylococcus aureus fnbpa-5

2VTF | pdb_00002vtf

X-ray crystal structure of the Endo-beta-N-acetylglucosaminidase from Arthrobacter protophormiae E173Q mutant reveals a TIM barrel catalytic domain and two ancillary domains

3CAL | pdb_00003cal

Crystal structure of the second and third fibronectin F1 modules in complex with a fragment of staphylococcus aureus fnbpa-5

3ZRZ | pdb_00003zrz

Crystal structure of the second and third fibronectin F1 modules in complex with a fragment of Streptococcus pyogenes SfbI-5

6Z9C | pdb_00006z9c

Structure of human POLDIP2, a multifaceted adaptor protein in metabolism and genome stability

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1QY0 | pdb_00001qy0

1QY1 | pdb_00001qy1

1QY2 | pdb_00001qy2

1YP6 | pdb_00001yp6

1YP7 | pdb_00001yp7

1ZND | pdb_00001znd

1ZNE | pdb_00001zne

1ZNG | pdb_00001zng

1ZNH | pdb_00001znh

1ZNK | pdb_00001znk

1ZNL | pdb_00001znl

2NND | pdb_00002nnd

2NNE | pdb_00002nne

2RKY | pdb_00002rky

2RKZ | pdb_00002rkz

2RL0 | pdb_00002rl0

2VTF | pdb_00002vtf

3CAL | pdb_00003cal

3ZRZ | pdb_00003zrz

6Z9C | pdb_00006z9c