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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Chen, W."

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Search Summary

This query matches 349 Structures.

Refinements

Structure Determination Methodology

experimental (349)

Scientific Name of Source Organism

	Homo sapiens (275)
	Schizosaccharomyces pombe 972h- (32)
	Saccharomyces cerevisiae (20)
	Saccharomyces cerevisiae S288C (19)
	Legionella pneumophila (9)
	Caenorhabditis elegans (8)
	Bos taurus (7)
	synthetic construct (7)
	Mus musculus (6)
	Rattus norvegicus (5)

More...

Taxonomy

	Eukaryota (348)
	Bacteria (20)
	other sequences (7)
	Eukaryota (eukaryotes) (3)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (249)
	ELECTRON MICROSCOPY (87)
	SOLUTION NMR (13)
	THEORETICAL MODEL (1)

Polymer Entity Type

	Protein (349)
	DNA (31)

Refinement Resolution (Å)

	1.0 - 1.5 (10)
	1.5 - 2.0 (61)
	2.0 - 2.5 (84)
	2.5 - 3.0 (68)
	3.0 - 3.5 (63)
	3.5 - 4.0 (35)
	4.0 - 4.5 (9)
	> 4.5 (6)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (13)
	2005 - 2009 (42)
	2010 - 2014 (55)
	2015 - 2019 (77)
	2020 - 2024 (154)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (349)
	Ligases (171)
	Hydrolases (10)

Symmetry Type

	Asymmetric (322)
	Cyclic (35)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (183)
	Artifacts (79)
	All alpha proteins (12)
	Small proteins (8)
	All beta proteins (1)

AllSelected

1 to 25 of 349 Structures

Page 1 of 14

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1AYZ \| pdb_00001ayz	Download File View File

CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE UBIQUITIN-CONJUGATING ENZYME RAD6 (UBC2) AT 2.6A RESOLUTION

Worthylake, D.K., Prakash, S., Prakash, L., Hill, C.P.

(1998) J Biological Chem 273: 6271-6276

Released	1998-08-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	UBIQUITIN-CONJUGATING ENZYME RAD6 (protein)

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1C4Z \| pdb_00001c4z	Download File View File

STRUCTURE OF AN E6AP-UBCH7 COMPLEX: INSIGHTS INTO THE UBIQUITINATION PATHWAY

Huang, L., Kinnucan, E., Wang, G., Beaudenon, S., Howley, P.M., Huibregtse, J.M., Pavletich, N.P.

(1999) Science 286: 1321-1326

Released	1999-11-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN CONJUGATING ENZYME E2 (protein) UBIQUITIN-PROTEIN LIGASE E3A (protein)

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1FBV \| pdb_00001fbv	Download File View File

STRUCTURE OF A CBL-UBCH7 COMPLEX: RING DOMAIN FUNCTION IN UBIQUITIN-PROTEIN LIGASES

Zheng, N., Wang, P., Jeffrey, P.D., Pavletich, N.P.

(2000) Cell 102: 533-539

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SIGNAL TRANSDUCTION PROTEIN CBL (protein) UBIQUITIN-CONJUGATING ENZYME E12-18 KDA UBCH7 (protein) ZAP-70 PEPTIDE (protein)
Unique Ligands	SO4, ZN

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1FXT \| pdb_00001fxt	Download File View File

STRUCTURE OF A CONJUGATING ENZYME-UBIQUITIN THIOLESTER COMPLEX

Hamilton, K.S., Shaw, G.S., Williams, R.S., Huzil, J.T., McKenna, S., Ptak, C., Glover, M., Ellison, M.J.

(2001) Structure 9: 897-904

Released	2001-10-10
Method	SOLUTION NMR
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	UBIQUITIN (protein) UBIQUITIN-CONJUGATING ENZYME E2-24 KDA (protein)

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1FZY \| pdb_00001fzy	Download File View File

CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE UBIQUITIN CONJUGATING ENZYME 1

Glover, M., Williams, R.S.

(2001) Structure 9: 897-904

Released	2001-10-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E2-24 KDA (protein)

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1I7K \| pdb_00001i7k	Download File View File

CRYSTAL STRUCTURE OF HUMAN MITOTIC-SPECIFIC UBIQUITIN-CONJUGATING ENZYME, UBCH10

Basavappa, R., Lin, Y.

(2002) J Biological Chem 277: 21913-21921

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E2 H10 (protein)

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1J7D \| pdb_00001j7d	Download File View File

Crystal Structure of hMms2-hUbc13

Moraes, T.F., Edwards, R.A., McKenna, S., Pashushok, L., Xiao, W., Glover, J.N.M., Ellison, M.J.

(2001) Nat Struct Biol 8: 669-673

Released	2001-08-08
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	MMS2 (protein) UBIQUITIN-CONJUGATING ENZYME E2-17 KDA (protein)

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1JAS \| pdb_00001jas	Download File View File

HsUbc2b

Miura, T., Klaus, W., Ross, A., Guentert, P., Senn, H.

(2002) J Biomol NMR 22: 89-92

Released	2003-09-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E2-17 KDA (protein)

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1JAT \| pdb_00001jat	Download File View File

Mms2/Ubc13 Ubiquitin Conjugating Enzyme Complex

VanDemark, A.P., Hofmann, R.M., Tsui, C., Pickart, C.M., Wolberger, C.

(2001) Cell 105: 711-720

Released	2001-06-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Ubiquitin-Conjugating Enzyme E2-17.5 KDA (protein) Ubiquitin-Conjugating Enzyme Variant Mms2 (protein)

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1JBB \| pdb_00001jbb	Download File View File

Ubiquitin Conjugating Enzyme, Ubc13

VanDemark, A.P., Hofmann, R.M., Tsui, C., Pickart, C.M., Wolberger, C.

(2001) Cell 105: 711-720

Released	2001-06-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ubiquitin conjugating enzyme E2-17.5 KDA (protein)

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1PZV \| pdb_00001pzv	Download File View File

Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans

Schormann, N., Lin, G., Li, S., Symersky, J., Qiu, S., Finley, J., Luo, D., Stanton, A., Carson, M., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Caenorhabditis elegans
Macromolecule	Probable ubiquitin-conjugating enzyme E2-19 kDa (protein)

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1Q34 \| pdb_00001q34	Download File View File

Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans

Schormann, N., Lin, G., Li, S., Symersky, J., Qiu, S., Finley, J., Luo, D., Stanton, A., Carson, M., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2003-08-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Caenorhabditis elegans
Macromolecule	Ubiquitin-conjugating enzyme E2-21.5 kDa (protein)

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1QCQ \| pdb_00001qcq	Download File View File

UBIQUITIN CONJUGATING ENZYME

Cook, W.J., Jeffrey, L.C., Xu, Y., Chau, V.

(1993) Biochemistry 32: 13809-13817

Released	1999-05-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (UBIQUITIN CONJUGATING ENZYME) (protein)

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1TTE \| pdb_00001tte	Download File View File

The Structure of a Class II ubiquitin-conjugating enzyme, Ubc1.

Merkley, N., Shaw, G.S.

(2004) J Biological Chem 279: 47139-47147

Released	2004-08-31
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Ubiquitin-conjugating enzyme E2-24 kDa (protein)

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1UR6 \| pdb_00001ur6	Download File View File

NMR based structural model of the UbcH5B-CNOT4 complex

Dominguez, C., Bonvin, A.M.J.J., Winkler, G.S., Van Schaik, F.M.A., Timmers, H.Th.M., Boelens, R.

(2004) Structure 12: 633

Released	2004-05-07
Method	SOLUTION NMR THEORETICAL MODEL
Organisms	Homo sapiens
Macromolecule	POTENTIAL TRANSCRIPTIONAL REPRESSOR NOT4HP (protein) UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2 (protein)
Unique Ligands	ZN

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1W4U \| pdb_00001w4u	Download File View File

NMR solution structure of the ubiquitin conjugating enzyme UbcH5B

Houben, K., Dominguez, C., Van Schaik, F.M.A., Timmers, H.T.M., Bonvin, A.M.J.J., Boelens, R.

(2004) J Mol Biology 344: 513

Released	2004-11-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2 (protein)

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1WZV \| pdb_00001wzv	Download File View File

Crystal Structure of UbcH8

Mizushima, T., Suzuki, M., Teshima, N., Yamane, T., Murata, S., Tanaka, K.

To be published

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 L6 (protein)

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1WZW \| pdb_00001wzw	Download File View File

Crystal Structure of UbcH8

Mizushima, T., Suzuki, M., Teshima, N., Yamane, T., Murata, S., Tanaka, K.

To be published

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 L6 (protein)

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1X23 \| pdb_00001x23	Download File View File

Crystal structure of ubch5c

Nakanishi, M., Teshima, N., Mizushima, T., Murata, S., Tanaka, K., Yamane, T.

To be published

Released	2005-05-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 D3 (protein)

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1XR9 \| pdb_00001xr9	Download File View File

Crystal Structures of HLA-B*1501 in Complex with Peptides from Human UbcH6 and Epstein-Barr Virus EBNA-3

Roder, G., Blicher, T., Johannessen, B.R., Kristensen, O., Buus, S., Gajhede, M.

(2006) Acta Crystallogr D Biol Crystallogr 62: 1300-1310

Released	2005-04-14
Method	X-RAY DIFFRACTION 1.788 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-15 alpha chain (protein) Ubiquitin-conjugating enzyme E2 E1 (protein)
Unique Ligands	GOL, SO4, URE

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1Y6L \| pdb_00001y6l	Download File View File

Human ubiquitin conjugating enzyme E2E2

Walker, J.R., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Kozieradzki, I., Bochkarev, A., Sundstrom, M., Arrowsmith, C., Edwards, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-01-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2E2 (protein)

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1YH2 \| pdb_00001yh2	Download File View File

Ubiquitin-Conjugating Enzyme HSPC150

Walker, J.R., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Kozieradzki, I., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-02-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HSPC150 protein similar to ubiquitin-conjugating enzyme (protein)

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1YLA \| pdb_00001yla	Download File View File

Ubiquitin-conjugating enzyme E2-25 kDa (Huntington interacting protein 2)

Choe, J., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Kozieradzki, I., Bochkarev, A., Sundstrom, M., Arrowsmith, C., Edwards, A., Dhe-paganon, S., Structural Genomics Consortium (SGC)

(2010) J Biological Chem 285: 36070-36080

Released	2005-02-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2-25 kDa (protein)

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1YRV \| pdb_00001yrv	Download File View File

Novel Ubiquitin-Conjugating Enzyme

Walker, J.R., Choe, J., Avvakumov, G.V., Newman, E.M., MacKenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Homo sapiens
Macromolecule	ubiquitin-conjugating ligase MGC351130 (protein)

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1Z2U \| pdb_00001z2u	Download File View File

The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance

Gavira, J.A., DiGiamamarino, E., Tempel, W., Liu, Z.J., Wang, B.C., Meehan, E., Ng, J.D., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2005-03-22
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Caenorhabditis elegans
Macromolecule	Ubiquitin-conjugating enzyme E2 2 (protein)
Unique Ligands	BU3, CL, NA, UNX

1 to 25 of 349 Structures

Page 1 of 14

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AYZ | pdb_00001ayz

1C4Z | pdb_00001c4z

1FBV | pdb_00001fbv

1FXT | pdb_00001fxt

1FZY | pdb_00001fzy

1I7K | pdb_00001i7k

1J7D | pdb_00001j7d

1JAS | pdb_00001jas

1JAT | pdb_00001jat

1JBB | pdb_00001jbb

1PZV | pdb_00001pzv

1Q34 | pdb_00001q34

1QCQ | pdb_00001qcq

1TTE | pdb_00001tte

1UR6 | pdb_00001ur6

1W4U | pdb_00001w4u

1WZV | pdb_00001wzv

1WZW | pdb_00001wzw

1X23 | pdb_00001x23

1XR9 | pdb_00001xr9

1Y6L | pdb_00001y6l

1YH2 | pdb_00001yh2

1YLA | pdb_00001yla

1YRV | pdb_00001yrv

1Z2U | pdb_00001z2u