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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Damberger, F.F."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Mus musculus (10)
	Homo sapiens (5)
	synthetic construct (3)
	Acidothermus cellulolyticus 11B (2)
	Antheraea polyphemus (1)
	Bombyx mori (1)
	Corynebacterium glutamicum (1)
	Equus caballus (1)
	Kluyveromyces lactis (1)
	Methanosarcina acetivorans (1)

More...

Taxonomy

	Eukaryota (22)
	Bacteria (4)
	other sequences (3)
	Archaea (1)

Experimental Method

	SOLUTION NMR (24)
	X-RAY DIFFRACTION (3)

Polymer Entity Type

	Protein (27)
	RNA (5)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	2.5 - 3.0 (2)

Release Date

	1995 - 1999 (1)
	2005 - 2009 (5)
	2010 - 2014 (15)
	2015 - 2019 (6)

Enzyme Classification Name

	Hydrolases (2)
	Ligases (1)

Symmetry Type

	Asymmetric (26)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (12)
	Artifacts (12)
	All alpha proteins (3)

AllSelected

1 to 25 of 27 Structures

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1XFR \| pdb_00001xfr	Download File View File

Solution structure of the Bombyx mori pheromone-binding protein fragment BmPBP(1-128) at pH 6.5

Michel, E., Damberger, F.F., Leal, W.S., Wuthrich, K.

(2011) J Mol Biology 408: 922-931

Released	2005-09-27
Method	SOLUTION NMR
Organisms	Bombyx mori
Macromolecule	Pheromone-binding protein (protein)

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2JPO \| pdb_00002jpo	Download File View File

NMR structure of Antheraea polyphemus pheromone-binding protein 1 at pH 4.5

Damberger, F.F., Wuthrich, K., Leal, W.S., Ishida, Y.

(2007) J Mol Biology 373: 811-819

Released	2007-10-30
Method	SOLUTION NMR
Organisms	Antheraea polyphemus
Macromolecule	Pheromone-binding protein (protein)

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2KFL \| pdb_00002kfl	Download File View File

Tammar Wallaby Prion Protein (121-230)

Christen, B., Hornemann, S., Damberger, F.F., Wuthrich, K.

(2009) J Mol Biology 389: 833-845

Released	2009-06-16
Method	SOLUTION NMR
Organisms	Notamacropus eugenii
Macromolecule	Major prion protein (protein)

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2KFM \| pdb_00002kfm	Download File View File

Mouse Prion Protein (121-231) with Mutations Y225A and Y226A

Christen, B., Hornemann, S., Damberger, F.F., Wuthrich, K.

(2009) J Mol Biology 389: 833-845

Released	2009-06-16
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Major prion protein (protein)

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2KFO \| pdb_00002kfo	Download File View File

Mouse Prion Protein (121-231) with Mutation V166A

Christen, B., Hornemann, S., Damberger, F.F., Wuthrich, K.

(2009) J Mol Biology 389: 833-845

Released	2009-06-16
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Major prion protein (protein)

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2KU4 \| pdb_00002ku4	Download File View File

Horse prion protein

Perez, D.R., Damberger, F.F., Wuthrich, K.

(2010) J Mol Biology 400: 121-128

Released	2010-06-09
Method	SOLUTION NMR
Organisms	Equus caballus
Macromolecule	Major prion protein (protein)

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2KU5 \| pdb_00002ku5	Download File View File

Mouse Prion Protein (121-231) with mutation D167S

Perez, D.R., Damberger, F.F., Wuthrich, K.

(2010) J Mol Biology 400: 121-128

Released	2010-06-09
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Major prion protein (protein)

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2KU6 \| pdb_00002ku6	Download File View File

Mouse Prion Protein (121-231) with mutations D167S and N173K

Perez, D.R., Damberger, F.F., Wuthrich, K.

(2010) J Mol Biology 400: 121-128

Released	2010-06-09
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Major prion protein (protein)

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2L1D \| pdb_00002l1d	Download File View File

Mouse prion protein (121-231) containing the substitution Y169G

Christen, B., Damberger, F.F., Perez, D.R., Hornemann, S., Wuthrich, K.

(2011) Proc Natl Acad Sci U S A 108: 17308-17313

Released	2011-08-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Major prion protein (protein)

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2L1E \| pdb_00002l1e	Download File View File

Mouse prion protein (121-231) containing the substitution F175A

Christen, B., Damberger, F.F., Perez, D.R., Hornemann, S., Wuthrich, K.

(2012) J Mol Biology 423: 496-502

Released	2011-08-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Major prion protein (protein)

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2L1H \| pdb_00002l1h	Download File View File

Mouse prion protein fragment 121-231 at 20 C

Christen, B., Damberger, F.F., Perez, D.R., Hornemann, S., Wuthrich, K.

To be published

Released	2011-08-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Major prion protein (protein)

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2L1K \| pdb_00002l1k	Download File View File

Mouse prion protein (121-231) containing the substitutions Y169A, Y225A, and Y226A

Christen, B., Damberger, F.F., Perez, D.R., Hornemann, S., Wuthrich, K.

To be published

Released	2011-08-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Major prion protein (protein)

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2L39 \| pdb_00002l39	Download File View File

Mouse prion protein fragment 121-231 AT 37 C

Christen, B., Damberger, F.F., Perez, D.R., Hornemann, S., Wuthrich, K.

(2011) Proc Natl Acad Sci U S A 108: 17308-17313

Released	2011-08-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Major prion protein (protein)

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2L40 \| pdb_00002l40	Download File View File

Mouse prion protein (121-231) containing the substitution Y169A

Christen, B., Damberger, F.F., Perez, D.R., Hornemann, S., Wuthrich, K.

(2011) Proc Natl Acad Sci U S A 108: 17308-17313

Released	2011-08-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Major prion protein (protein)

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2L52 \| pdb_00002l52	Download File View File

Solution structure of the small archaeal modifier protein 1 (SAMP1) from Methanosarcina acetivorans

Damberger, F.F., Ranjan, N., Sutter, M., Allain, F.H.-T., Weber-Ban, E.

(2011) J Mol Biology 405: 1040-1055

Released	2011-02-09
Method	SOLUTION NMR
Organisms	Methanosarcina acetivorans
Macromolecule	METHANOSARCINA ACETIVORANS SAMP1 HOMOLOG (protein)

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2LFW \| pdb_00002lfw	Download File View File

NMR structure of the PhyRSL-NepR complex from Sphingomonas sp. Fr1

Campagne, S., Damberger, F.F., Vorholt, J.A., Allain, F.H.-T.

(2012) Proc Natl Acad Sci U S A 109: E1405-E1414

Released	2012-04-25
Method	SOLUTION NMR
Organisms	Sphingomonas sp. Fr1
Macromolecule	NepR anti sigma factor (protein) PhyR sigma-like domain (protein)

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2MXY \| pdb_00002mxy	Download File View File

Solution structure of hnRNP C RRM in complex with 5'-AUUUUUC-3' RNA

Cienikova, Z., Damberger, F.F., Hall, J., Allain, F.H.-T., Maris, C.

(2014) J Am Chem Soc 136: 14536-14544

Released	2015-02-25
Method	SOLUTION NMR
Organisms	Homo sapiens synthetic construct
Macromolecule	Heterogeneous nuclear ribonucleoproteins C1/C2 (protein) 5'-R(APUPUPUPUPUP*C)-3' (nucleic acid)

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2MZ1 \| pdb_00002mz1	Download File View File

Solution structure of hnRNP C RRM in complex with 5'-UUUUC-3' RNA

Cienikova, Z., Damberger, F.F., Hall, J., Allain, F.H.-T., Maris, C.

(2014) J Am Chem Soc 136: 14536-14544

Released	2015-04-08
Method	SOLUTION NMR
Organisms	Homo sapiens synthetic construct
Macromolecule	Heterogeneous nuclear ribonucleoproteins C1/C2 (protein) 5'-R(UPUPUPUP*C)-3' (nucleic acid)

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2N3O \| pdb_00002n3o	Download File View File

Structure of PTB RRM1(41-163) bound to an RNA stemloop containing a structured loop derived from viral internal ribosomal entry site RNA

Maris, C., Jayne, S.F., Damberger, F.F., Ravindranathan, S., Allain, F.H.-T.

To be published

Released	2016-08-10
Method	SOLUTION NMR
Organisms	Homo sapiens synthetic construct
Macromolecule	Polypyrimidine tract-binding protein 1 (protein) RNA (5'-R(GPGPGPAPCPCPUPGPGPUPCPUPUPUPCPCPAPGPGPUPCPCP*C)-3') (nucleic acid)

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3HSF \| pdb_00003hsf	Download File View File

HEAT SHOCK TRANSCRIPTION FACTOR (HSF)

Damberger, F.F., Pelton, J.G., Liu, C., Cho, H., Harrison, C.J., Nelson, H.C.M., Wemmer, D.E.

(1995) J Mol Biology 254: 704-719

Released	1995-11-14
Method	SOLUTION NMR
Organisms	Kluyveromyces lactis
Macromolecule	HEAT SHOCK TRANSCRIPTION FACTOR (protein)

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4B0R \| pdb_00004b0r	Download File View File

Structure of the Deamidase-Depupylase Dop of the Prokaryotic Ubiquitin-like Modification Pathway

Ozcelik, D., Barandun, J., Schmitz, N., Sutter, M., Guth, E., Damberger, F.F., Allain, F.H.-T., Ban, N., Weber-Ban, E.

(2012) Nat Commun 3: 1014-1014

Released	2012-09-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Acidothermus cellulolyticus 11B
Macromolecule	DEAMIDASE-DEPUPYLASE DOP (protein)

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4B0S \| pdb_00004b0s	Download File View File

Structure of the Deamidase-Depupylase Dop of the Prokaryotic Ubiquitin-like Modification Pathway in Complex with ATP

Ozcelik, D., Barandun, J., Schmitz, N., Sutter, M., Guth, E., Damberger, F.F., Allain, F.H.-T., Ban, N., Weber-Ban, E.

(2012) Nat Commun 3: 1014

Released	2012-09-12
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Acidothermus cellulolyticus 11B
Macromolecule	DEAMIDASE-DEPUPYLASE DOP (protein)
Unique Ligands	ATP, MG

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4B0T \| pdb_00004b0t	Download File View File

Structure of the Pup Ligase PafA of the Prokaryotic Ubiquitin-like Modification Pathway in Complex with ADP

Ozcelik, D., Barandun, J., Schmitz, N., Sutter, M., Guth, E., Damberger, F.F., Allain, F.H.-T., Ban, N., Weber-Ban, E.

(2012) Nat Commun 3: 1014

Released	2012-09-12
Method	X-RAY DIFFRACTION 2.159 Å
Organisms	Corynebacterium glutamicum
Macromolecule	PUP--PROTEIN LIGASE (protein)
Unique Ligands	ADP, MG

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4BS2 \| pdb_00004bs2	Download File View File

NMR structure of human TDP-43 tandem RRMs in complex with UG-rich RNA

Lukavsky, P.J., Daujotyte, D., Tollervey, J.R., Ule, J., Stuani, C., Buratti, E., Baralle, F.E., Damberger, F.F., Allain, F.H.T.

(2013) Nat Struct Mol Biol 20: 1443

Released	2013-11-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TAR DNA-BINDING PROTEIN 43 (protein) 5'-R(GPUPGPUPGPAPAPUPGPAPAPUP)-3' (nucleic acid)

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5M8I \| pdb_00005m8i	Download File View File

Solution structure of CUG-BP2 RRM3 in complex with 5'-UUUAA-3' RNA

Diarra dit Konte, N., Damberger, F.F., Allain, F.H.T.

(2017) Nat Commun 8: 654-654

Released	2017-10-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CUGBP Elav-like family member 2 (protein) RNA (5'-R(UPUPUPAP*A)-3') (nucleic acid)

1 to 25 of 27 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1XFR | pdb_00001xfr

2JPO | pdb_00002jpo

2KFL | pdb_00002kfl

2KFM | pdb_00002kfm

2KFO | pdb_00002kfo

2KU4 | pdb_00002ku4

2KU5 | pdb_00002ku5

2KU6 | pdb_00002ku6

2L1D | pdb_00002l1d

2L1E | pdb_00002l1e

2L1H | pdb_00002l1h

2L1K | pdb_00002l1k

2L39 | pdb_00002l39

2L40 | pdb_00002l40

2L52 | pdb_00002l52

2LFW | pdb_00002lfw

2MXY | pdb_00002mxy

2MZ1 | pdb_00002mz1

2N3O | pdb_00002n3o

3HSF | pdb_00003hsf

4B0R | pdb_00004b0r

4B0S | pdb_00004b0s

4B0T | pdb_00004b0t

4BS2 | pdb_00004bs2

5M8I | pdb_00005m8i